XLOC_025331 (sp100.1)


Basic Information

Item Value
gene id XLOC_025331
gene name sp100.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24537023 ~ 24555259 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049999
TTGCTTCATTCAGGCGGGAGATTtggaaacaacaacaactgatTCTGCACGGCTTTTGTCAAGCCAAAAGTACACAAATCCCCCATACAGCTCAAACTTTAACAGATCGTTGAATTCATGGGAGTCATCGACCAAATGGAGTTGGATTTTCTAACGAATCAACAGCTGTTGTCATTTTTCCGCCGCAAAAAGACGGAGATTTCGTGCATTGAGCAACCGCACATTTTCCTCACACAGCTGAGAGACTACGACCTGTTGCCGGAGCCGCTCTTTGAGAAGGTGAAAAAGATGCACAAACGAGATCAGAAGCAGAAAGGAGTCTATGAGGTTCTGGACTGGCTGGAGAAAGAGAGATCTCAGCACATGCATAGATTCTGGCGCTGTGTGTTTAAAGATCATATCGTGCAGAAATACCCCACTCTATGCCTGCTCAAAAACAGCCTGCCAGATGCTGTCATTAGTTTCTCAGAAGAACCTGCAGATGCTGAGACGCCGACAAAAGAGAGTGAAGTAACAGAGAAGAAAGAGAAGCCGAGGAAAAACACCAGAAAGAGAATTAGAGATGACCAAAGTAGTGAGGATAGTGGTGATCCCGGTCCGTCTTCTGCTTCCACTCCGACTCGCAAGAAACCAGCTAAGAAACCTTCATTCTCATCTCCTGTAAAGAAAGGAGACAATCAGGAGATTTGGATGTTTCCTATTTATAAAACCCAGCTGCCTGTAAAATGTGGGGATAAAGAAGGCACTCTCTATCGGGACAAACTGCCTAAAGGAGAGAAGTGTATTTTGGCTCAGGGACGCTGGTTTTCCCCATCTGAGTTTGAGAAGTTTGCAGGGAAGGAGAAGACCAAAAACTGGAAAGTCAGCATCCGCTGCAGAAATACACCACTTAAAAAACTCATAGAGGAGAATCATCTTCAGTGTCCTCCGATGGAGAGAAGAAAGAGGAAATGTGTCCAAAAAAACAAGACAGAGCTGTGTTGCATCAGTTCATCGGAGAGCTCCAGTCTAGATTCAGAAACCAGCGCCAGTTCAGAAGAGGAAAGTGATGCTGAAGACTTCCAGGAGGAGAGCAGGAGCTCAGGAGGAGGATCACAGTTTAGAAGTAGAGTtcatgaggaggaggaggaggaggaagatgagATGGCAGATCTGACTGTTTTCCAGGCTCCAACTTTACAAGTCACCTGCGTTTCACTCACTGGGACTCTGTACAAAGGCAGGTTTGCCACAGGGAGGCGTGGGAAGTGTATACGGACTGAGGAACGCTGGTTCACTCCGGAGGAATTTGTAAAGGAGGAACCAACTCTCACTGATGGACTCTGGAAAAGAGATATACTGTGCCATGGAAAAACTCTCAACTTTTTATGCAAGAAAAAGATCCTACAGATTCATTCTcttctgtgtgaatgtgtgaaatgCAGCACTGATCCAGAAGACCTGATGGAGCAGAACAACGATGATGTGTGTTACGCATGTCACTGTGGGGTAGATCTGAGGTGTTGTGATGGATGTCCACGGGCTTTTCATTCAGACTGTCACCTACCAGCTGTACCTGAAGGCTCTGGGGAATGGATTTGCACCTTTTGCGTGTTAAAAACCAGTCTACAGTGGCGTGCATCCAGTAACATGACTGAACAGGAAGCTTTTGATTCTCCAGTTTCTCAGTATATACTGCAGTGCCACTACCTGCTGTTATGTATGTACAAGGAGGATATCCAGAGGGTGTTTGTAGAGGATCCACGCCCAAATGTGGACAGATACTCTGAGTTCATTTCTCAGCCAATGTGGCTGGACAGAATAAAGTCAAAGTTAGAAAGTAAGAAGTATCAGAAGTTTGGAGAGTTTGTCTCTGACTTTCGGCTCATTTTCAGCAACTGCAAGAACTTTAATAAGGACAATGAGTTTGGTCAATTGGGTGCCAAACTGAAGGAGATCTTTGAGGAGGAGATCCAGAAAATCTTCTTTATCCAATAACAGCCATCTTTTTCCAAATTTTTCAAATAAGTGGAGCTTTAAGTAGCTTTAAATTTTTCAGTTTATCCTAGTTTAAAGTAAGTGAGGTGTAAAGAGTACCTGAAAATGTTACAAGTCACCAATTTGAAAACTATTTGGGTAAAAAATCATAGTGAAACTTATATTATAAGCACCTAAAATTTTTATTCATATACTGTAGCTCAAAATGCACTACTTTTTGGAACCctggctcattggaaatacaagCCCTCGGTTACATTTTTGCACAACtgggaataaataattaaatattatttaatattatgttaataaaataattgtccAACAAATAAATATCATAAAAACTACTTAGATAGGTCTGTAATCGCCCGGCTATCTCCATATGGAAAACTTTTCTAGTCAggtcagtttgcttggtagctTGCCTTGTACATCATGCTTGGGACGTGGAGCAAACCAGGTATGAGTTGAGCAAACAACGGATTCAAAAAGCAGGTTAAAACAAAGCAATGTGCAATCTTGCTAAAAGTATGCGGCCACTATgtgcttttcttttttggtttgcttttaaaaacactttttatttggGTTAATAGAAGAGAGTGGATCAGTCGATTAAACGTTAAGTCCAGTCACttatttatagcactttataatacaATGCACAAAGcagattaaagaaataaaaactaaaccatGGAGAAACTGgagttttattatgtaatttaagTTAGTTTAGATCAGTAATTGGCAGTTCTACAATAAGCAGCAATGTTGTTATTCAGCTCATTATTCATTATTCACCTTTTAATACTTGATTCTTAATGGATTTTTAATGTTGCAAAATTAtgatgttttttaatcatttagattgttttataaataaacatttcttttatGGT

Function

symbol description
sp100.1 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in hepatic venoocclusive disease with immunodeficiency and tuberculosis. Orthologous to several human genes including SP140L (SP140 nuclear body protein like).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-239 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in hepatic venoocclusive disease with immunodeficiency and tuberculosis. Orthologous to several human genes including SP140L (SP140 nuclear body protein like).

Ensembl:

ensembl_id ENSDARG00000055359

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049999 True 2879 mRNA 0.41 16 24537023 24555259

Neighbor

gene id symbol gene type direction distance location
XLOC_025330 dnal4a coding upstream 18527 24511959 ~ 24518496 (+)
XLOC_025329 nptxra coding upstream 35227 24482999 ~ 24501796 (+)
XLOC_025328 cbx6b coding upstream 72229 24458204 ~ 24464794 (+)
XLOC_025327 NA coding upstream 85010 24438597 ~ 24452013 (+)
XLOC_025326 pvalb6 coding upstream 102118 24297482 ~ 24434905 (+)
XLOC_025332 sp100.2 coding downstream 1381 24556640 ~ 24568002 (+)
XLOC_025333 sp100.3 coding downstream 15904 24571163 ~ 24591510 (+)
XLOC_025334 si:dkey-68o6.5 coding downstream 40663 24595922 ~ 24603705 (+)
XLOC_025335 si:dkey-68o6.6 coding downstream 48664 24603923 ~ 24610004 (+)
XLOC_025336 zgc:171506 coding downstream 56932 24612191 ~ 24627802 (+)
XLOC_025429 BX649540.1 misc downstream 5693480 30248739 ~ 30249036 (+)
XLOC_025323 NA non-coding upstream 319512 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 352597 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 403538 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 440987 24095957 ~ 24096036 (+)
XLOC_025342 NA non-coding downstream 375321 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 500717 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 753451 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 1017519 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 1048409 25603668 ~ 25624618 (+)

Expression


Co-expression Network