XLOC_025343 (cbx7a)


Basic Information

Item Value
gene id XLOC_025343
gene name cbx7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24986145 ~ 24994617 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050017
AGAGCTGGACGAGCAGCGGACCCGAAGGTGCACTAAGAGTTCCGACGGCTTTAAATCCTAAGAAAACACACTGCCAGAGTCTACGCGGGACATCTCGACGACATCTCATCCTCTGAAGAGGAAAAACGGAAGAGATCAGAAACTCTTTGCTGCACTGAATGATCTCATGAACATGGAGCTGTCATCAATAGGAGAGCAAGTGTTTGCGGTGGAGTCAATAACGAAGAAGAGGATAAGAAAAGGAAATGTGGAATATCTTTTAAAGTGGCAAGGATGGTCGCCTAAGTACAGCACCTGGGAACCAGAAGACAACATCCTGGACCCTCGTCTTGTCCTTGCCTTCGAAGAAAAAGCAGAGAAGGACAGAGCTCTGGCTTATAAGAAGAAAGGCCTGAGACCTCGTCAAGTTATTCTGCGGAACATCTACCCGATGGACCTTCGAAGTGCACACAAGGTTCCAGATAAACCCAGTCCAAGAATCCGTCTGTCACTCACCCGCTCCATGAGCACCGAAGTGGACCAAAACGGAAGGCGCTATAGAGATAGTGTTGTCTACCGTCGCTTAAAGAACAGGTACAAGAACAGGCAGTGCAGATCCAGACTCTTTGAAGGCATCAAGCCATCCAAGCAGACAATGAGACATCCACTTCCTGCAAAAGACTGTACAGAGAACGCGTGGAATGAAGACGAGCAGAAGAGAAAGGTCAAGAAAATGAGAAAAGATGAAGAAAACACAACGCAAGTGCATCAGGACATTCCGAGTGGTCAAGAGATGTCCGAGGGTTACAACTCTTCGGCAGAACAGGAAAGTGAAATCACCATCAAGGAAGACGAAAACTGCTCTTCCATTTTTGACCAAGAAGAGAAGCCAAGCGAAGATACGGGTACAGCCATAGGAGCACCAGAAAGCAGTACAATCACAGACACAGAAAAGAATGAGCCagtcacaaacactgcaggcgaCGAGGACTGTGTATGGGTATCGCATGACACAACAAACACTGATCAATCATTACACAAGTGCACTAAGTCAGGAGCTGAGGAAGGTGTGTTTGACAGAGTACAGAACAGACCTTCAGTTATCGAGGTGCGTCTGAGCGCTAGATGTGGACAGGAGGAGGTAAGAGAATCAGCTGAGGTAGGCAGTTCAGAGGCCAAAGACAAGGAAGGGATTGACGCTGAAGTCACGGCAGAATTCCAGGTTCCAATTGACCAATTACAAACTCCTGTCACAACCGCAGTGCATCCTGGGAAAGTCATAGTGACACAGGTGACCATAAATTCCTTGACCGTGACCTTTAAAGAGGCTATGACGGCAGAGGGTTTTTTCAGTGAGTGTGGGCTTGAGGTCTAAATTGACAAGGAAATCCAAGAGCATTTCATTAGAAACATGTACAGTTAGTCAGGACCAAGTGAACGACACAGTTCACAGTAGTGAAGCAGATATTGTCCAAGCAAGGTAAGGACACCTCCGAGGCATTTTTCCTTCAAGTttgtccttgtgtcattgtggtAAGTTAACCGTTGATGGATGACATTTCTGAATATACTCAGTGATGCTGTACACCAAGGTTTCAAGCATGTAACGCAAATCTCCATATCCGTACCACTACTCTTCCAGCAGTCGCCATTACACTAACTATAAGAAGAAACCGTTTTAAGTTCCGACTCCAAGACTGAACTTCGGTTACCTCACCTGTTTGTCCTGTAACCAAGCAGGTGGGAAAAGGAAAGAGCACCTGGCTTTGTTTCCATATCTGTGCCCGAGCTCTCTTCGCTCTGTTCAGAGGcctttgtgcatttttaaagagacagtaTTGGTTTACATTCACAACCGCTACAGTGGACGCTTTTTTGTAGGGCTAGATCCTGTTCATCTGaacacatgtgctttaggtgTGCTTTTAGCATGGCAGAAATCAAAGCCGAGCCTAAAAACATGTTGTGGTCGTGGTGATATTTGGCTTATAAGCTCTGTTGTTGCTCTCACATGTGACAACTGCACTTTTTTTGCttgtatttacagtaaataaatggaaaaataaagTTGTGggtgattttaaa

Function

symbol description
cbx7a Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; multiple myeloma; and myeloid leukemia. Orthologous to human CBX7 (chromobox 7).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-400 Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; multiple myeloma; and myeloid leukemia. Orthologous to human CBX7 (chromobox 7).

Ensembl:

ensembl_id ENSDARG00000038025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050017 True 2064 mRNA 0.46 6 24986145 24994617

Neighbor

gene id symbol gene type direction distance location
XLOC_025342 NA coding upstream 49890 24930580 ~ 24936255 (+)
XLOC_025341 mrtfaa coding upstream 221018 24708685 ~ 24765127 (+)
XLOC_025340 slc25a17 coding upstream 293782 24681855 ~ 24692363 (+)
XLOC_025339 zmp:0000000912 coding upstream 325817 24655643 ~ 24660328 (+)
XLOC_025338 zgc:113411 coding upstream 336251 24640946 ~ 24649894 (+)
XLOC_025344 CR936416.1 coding downstream 61359 25055976 ~ 25060120 (+)
XLOC_025345 st13 coding downstream 92988 25087605 ~ 25100726 (+)
XLOC_025346 napsa coding downstream 126539 25121156 ~ 25133244 (+)
XLOC_025347 si:ch211-256m1.8 coding downstream 159461 25154078 ~ 25165189 (+)
XLOC_025348 TST coding downstream 172188 25166805 ~ 25169831 (+)
XLOC_025429 BX649540.1 misc downstream 5254122 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 534132 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 768634 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 801719 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 852660 24121201 ~ 24133485 (+)
XLOC_025351 NA non-coding downstream 314093 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 578161 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 609051 25603668 ~ 25624618 (+)
XLOC_025355 NA non-coding downstream 650614 25645231 ~ 25648375 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_00728121_00732221 NA coding CI01000034 null 727438 ~ 732221 (-)
tiger barb (Puntius tetrazona) G178492 NA non-coding NW_025047891.1 JAEQBD010000236.1 206070 ~ 207393 (+)
mexican tetra (Astyanax mexicanus) G195115 NA non-coding NC_035919.1 CM008322.1 3347202 ~ 3351510 (+)