XLOC_025345 (st13)


Basic Information

Item Value
gene id XLOC_025345
gene name st13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25087605 ~ 25100726 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050019
GCCTGCGCAAAACTCGCATTCTCGCGTTCAGTGACTCGCGCGTGCAGAGCGAGTTCAATCTCGCGACCCTCAAATCGCTGCTGGGGAAGCGCGTTTTAGGGATTTTGCTCTTTCAGGATTGGTTTGCTCCGCTTGAGTTTGATTCGTGTGGAAAATGGACCCTCGGAAAGTGACAGAGTTAAAGGCCTTTGTGCAGTTGTGCAATGAGAATCCATCAGTGCTGCATCTGCCAGAGATGAGCTTCTTTAAAACCTGGCTGCTGGGAATGGGAGCAAGTATACCATCACCAACAATGAATGACAGCTCATCATGCAAGGGAAGCTGTCCATGTGATGGAGGCGCAAAAAAAGCAGCACCGAAACCCGAACCAGCCCCGCCGTCTGAGAGCGAGGAAAGCGAAATTGAAATCGACAATGAAGGAGTGATTGAGCCTGACACAGATGATCCTCAAGAGATGGGGGACTTTGAAAACTTGGAGGTCACAGAAGAGATGATGGACCAGGCCAATGAGAAGAAAACTGAGGCCATCGATGCGTTAGGAGATGGTGATCTACAAAAAGCTCTAGACCTCTTCACTGAGGCCATCAAACTCAACCCAAAATTGGCCATTTTGTACGCCAAAAGAGCCAGTGTTTATGTGAAGATGCAGAAACCCAACGCTGCCATCAGAGACTGTGACCGGGCTATCAGCATCAACCCAGACTCTGCCCAGCCGTATAAATGGAGAGGGAAAGCACACAAGTTGCTTGGCCATTGGGAGGAGTCTGCTCGAGATTTGGCCATGGCCTGTAAGCTGGACTATGATGAAGAGGCCAGTGCCATGCTCAAAGAAGTCCAGCCAAAGGCCAACAAAATTATTGATCACCGGCGCAAATATGAACGCAAGCGCGAAGAACGAGAGATCCGAGCCCGACAGGAGCGAGTGAAGAAAGCGAGGGAGGAGCACGAGAGAGCACAGCGGgaagAGGAAGCCAGACAACAGgctggaggtggaggaggaggagccggagcagGAGGATTCCCAGGATTTCCAGGAGGTGCCGGTTTTCCAGGTGGAATGCCTGGATTTAACAACCTATTTAATGACCCAGAGGTCCTCATGGCTATGCAGGACCCAGAGGTGATGGCAGCGTTCCAGGATGTGGCGCAAAACCCCGCCAACATTGCCAAGTACCAGAGCAACCCGAAAATCATGGCCCTGATCAACAAACTCAGCTCCAAATTTGCCGGCCCTCAGCcctaaactataataataatggcAAAAAGAGTTCATGTCCGGTTCCAATACTCTGCTGTAGCTTTTTCACTCTGGGTTTCTTGCCGTAATTTACCAACAGCGCTTAGCTGGAGATACTGACTGTTTACGAAAGCAGAAGAAACTATGAAAGAGTATCGGAACTAGGCCAGAGAGATGGGAGGGGTGCGGGGTGTCGACTGAGAGACGCATGACGCAATTACAATCGAGTTTATTTTCTAAACGTTTTGTTGGGAATGAAGTATTTTTGTGGGCTTCACCGAGCTCAACATATTTAGCACTTGATTTTGGATTGGAGAGACTATTCTAGCTGCATTTAACAAAAGCAGTCGATCATTCCTGACGTTTAGTCTATTAACCATCACAACATTAGACTGGAGAACTGCTCTGATGTTGGGTTGCTTGCTGCAGATTGATCAAGTCTAGTAGGTCTATGTTTGGCTCAAGACTGGGTTTagactaaaatctttttttttttttttgtctaatcagTCTTTCACTTCCCGGGTTTCCCTTAAATggtatttcattatttttgttatcattattattcatctCCTCTCCCTCTGTGTAATCTGACATTGTTTTCTTAATTCATTGTTTCTCTCTTGTCAATGCAAAAGCATTCAATTCAATCATAATCGACTTTCTCATCGTGGCAAATTTGCATCTTATGGAATTTCATGATGATTTCATTCAATAAACATTTTGGTTGTTGCAaatctaaaa

Function

symbol description
st13 Predicted to enable heat shock protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding and protein-containing complex assembly. Orthologous to several human genes including ST13 (ST13 Hsp70 interacting protein).

GO:

id name namespace
GO:0065003 protein-containing complex assembly biological_process
GO:0061077 chaperone-mediated protein folding biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0031072 heat shock protein binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-5395 Predicted to enable heat shock protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding and protein-containing complex assembly. Orthologous to several human genes including ST13 (ST13 Hsp70 interacting protein).

Ensembl:

ensembl_id ENSDARG00000021973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050019 True 1984 mRNA 0.46 13 25087605 25100726

Neighbor

gene id symbol gene type direction distance location
XLOC_025344 CR936416.1 coding upstream 27485 25055976 ~ 25060120 (+)
XLOC_025343 cbx7a coding upstream 92988 24986145 ~ 24994617 (+)
XLOC_025342 NA coding upstream 151350 24930580 ~ 24936255 (+)
XLOC_025341 mrtfaa coding upstream 322478 24708685 ~ 24765127 (+)
XLOC_025340 slc25a17 coding upstream 395242 24681855 ~ 24692363 (+)
XLOC_025346 napsa coding downstream 20430 25121156 ~ 25133244 (+)
XLOC_025347 si:ch211-256m1.8 coding downstream 53352 25154078 ~ 25165189 (+)
XLOC_025348 TST coding downstream 66079 25166805 ~ 25169831 (+)
XLOC_025349 il2rb coding downstream 90640 25191366 ~ 25209006 (+)
XLOC_025350 c1qtnf6a coding downstream 116064 25216790 ~ 25222662 (+)
XLOC_025429 BX649540.1 misc downstream 5148013 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 635592 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 870094 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 903179 24161869 ~ 24184426 (+)
XLOC_025351 NA non-coding downstream 207984 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 472052 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 502942 25603668 ~ 25624618 (+)
XLOC_025355 NA non-coding downstream 544505 25645231 ~ 25648375 (+)
XLOC_025356 NA non-coding downstream 599865 25700591 ~ 25720214 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_00648618_00659733 ST13 coding CI01000034 null 647886 ~ 659733 (-)
bowfin (Amia calva) AMCG00015015 f10a1,st13,LOC106607171 coding CM030128.1 CM030128.1 42226898 ~ 42234065 (-)