XLOC_025596


Basic Information

Item Value
gene id XLOC_025596
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39050589 ~ 39052710 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052364
ggccctacctggtcctgctccagtaaacgtgtgaggagccctgcatgccgaatgacgagttactcagaaacatTGCAAATTGGCACCActttggattgacattctgctactttcctccaaggctgtttttttttttttttattcattctctCAGCTATCAGCAATctcgaggttccatggtgtaatggttagcactctggactctgaatccagcgatccgag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052364 True 222 lncRNA 0.46 2 39050589 39052710

Neighbor

gene id symbol gene type direction distance location
XLOC_025595 kcnj19a coding upstream 191284 38793499 ~ 38859305 (+)
XLOC_025593 asic2 coding upstream 424649 37824268 ~ 38625940 (+)
XLOC_025594 si:dkey-7f16.3 coding upstream 501838 38540380 ~ 38548751 (+)
XLOC_025592 si:dkey-260c8.8 coding upstream 1244306 37790351 ~ 37806283 (+)
XLOC_025591 CR388062.4 coding upstream 1261644 37788861 ~ 37788945 (+)
XLOC_025597 tmem98 coding downstream 47006 39099716 ~ 39110228 (+)
XLOC_025598 CR392006.1 coding downstream 130036 39182746 ~ 39182862 (+)
XLOC_025599 NA coding downstream 206100 39258810 ~ 39264517 (+)
XLOC_025600 zgc:165423 coding downstream 487304 39540014 ~ 39550089 (+)
XLOC_025601 BX537342.1 coding downstream 503052 39555762 ~ 39564499 (+)
XLOC_025429 BX649540.1 misc upstream 8801553 30248739 ~ 30249036 (+)
XLOC_025590 SNORD35B non-coding upstream 1262029 37788476 ~ 37788560 (+)
XLOC_025589 CR388062.2 non-coding upstream 1262300 37788203 ~ 37788289 (+)
XLOC_025588 CR388062.3 non-coding upstream 1262687 37787818 ~ 37787902 (+)
XLOC_025586 NA non-coding upstream 1295627 37751136 ~ 37754962 (+)
XLOC_025605 NA non-coding downstream 565858 39618568 ~ 39623925 (+)
XLOC_025606 NA non-coding downstream 574123 39626833 ~ 39632214 (+)
XLOC_025587 rps11 coding upstream 1261345 37787229 ~ 37789244 (+)

Expression


Co-expression Network