Fish Transcriptome and Expression Database

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model fish

XLOC_025598 (CR392006.1)

Basic Information

Item	Value
gene id	XLOC_025598
gene name	CR392006.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	39182746 ~ 39182862 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050423
agccacagccatatcaccctgtagCCCAAGAGAGGCTaaccactgaagctaagcagggctgagcctgatcagtacctgaatgggagaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111413

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00050423	True	117	rRNA	0.52	1	39182746	39182862

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025597	tmem98	coding	upstream	72518	39099716 ~ 39110228 (+)
XLOC_025596	NA	coding	upstream	130036	39050589 ~ 39052710 (+)
XLOC_025595	kcnj19a	coding	upstream	323441	38793499 ~ 38859305 (+)
XLOC_025593	asic2	coding	upstream	556806	37824268 ~ 38625940 (+)
XLOC_025594	si:dkey-7f16.3	coding	upstream	633995	38540380 ~ 38548751 (+)
XLOC_025599	NA	coding	downstream	75948	39258810 ~ 39264517 (+)
XLOC_025600	zgc:165423	coding	downstream	357152	39540014 ~ 39550089 (+)
XLOC_025601	BX537342.1	coding	downstream	372900	39555762 ~ 39564499 (+)
XLOC_025602	aldoaa	coding	downstream	384137	39566999 ~ 39577052 (+)
XLOC_025603	cln3	coding	downstream	396531	39579393 ~ 39599339 (+)
XLOC_025429	BX649540.1	misc	upstream	8933710	30248739 ~ 30249036 (+)
XLOC_025591	CR388062.4	non-coding	upstream	1393801	37788861 ~ 37788945 (+)
XLOC_025590	SNORD35B	non-coding	upstream	1394186	37788476 ~ 37788560 (+)
XLOC_025589	CR388062.2	non-coding	upstream	1394457	37788203 ~ 37788289 (+)
XLOC_025588	CR388062.3	non-coding	upstream	1394844	37787818 ~ 37787902 (+)
XLOC_025605	NA	non-coding	downstream	435706	39618568 ~ 39623925 (+)
XLOC_025606	NA	non-coding	downstream	443971	39626833 ~ 39632214 (+)
XLOC_025609	BX649356.1	non-coding	downstream	701957	39884819 ~ 39884956 (+)

Expression

Co-expression Network