XLOC_025610 (ccdc97)


Basic Information

Item Value
gene id XLOC_025610
gene name ccdc97
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39958407 ~ 39967412 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050448
GCTGGTCAATAGTAAACGTATACACGTGGATGTAAACGGAACGGAACCAACAATGTGGAAGAGAATGTTCCGCACGAATATATTAGTTGTTACACTGCTGAGCAGAACCTAAAacgcagttgttgttgttttaaatactGGCGATTTTAAAGGAATAATGCAAATTGGGTACTCGATAGATAGATGTGAATAGTAAACGTTACATCAGGCTGTTGTCAGAGTTACACCTTCAGTGGTCTTTCATAATAGCGTTGGCATGATTGGcagaataaacataaaatatcgAGACACATTTCGCTGATAAATCAACACTTGTTAGCACTTAAACTGTATTCTGAAATGTGGGGAGAAATCGAGCCCCGTGTCAACGGGCAAGAGAGCATGAAGAGCCGCGGGACTGACCAGAGACGGACACACTCTCCAGATCCACAGCAGAAGACAGTATTGTGGGGAGAAATCGAGTCCACCTCCAAACCTGACCCACCTACCTGGAGTCAACCTGCTTCTCAAGACAGTCTACCAGCTCTTCCTCATCCTCCTGAGACAAATGCCAGAGAGGTCAACAACACACCCAGCTGCTCTTCAGATGTACAGGATGAGCCGCCCATTAGTCTCAGCGCAATGATAGAGACTATAGCCGCCAGTGGGAGTCCAGTGAAAAGTCAGCAGCTGGGGGATCCGGACTTAACTCTGGAGGAGAAGAGGGAGGTTTTAATGGATCAGTACAGATCCAGGCCTTTAGTCTTTTTGGAGCGCTATCAGGCTCATCTGAAGCCAGAGCACATAGACGCTTTTTCACACCTGAGCAGCGACTGCAGGGTGCAGTATTACTGTAAGGAGATTCAGAGACGGGCATCTGGATCAGCTGACCGAAGAAGAGTTCGGAATCACCGGTATGCCGCTCTACGGGCTCTTCAGAAAGATGGCCAGTACTTCAGCGAGGAGCAGATGCGTGTACGAGACCCGCTGCTGTACGAGCAGTACATCGGTCAGTACCTTAGCGAAGAAGAGATCCTGCAGCGCTCAGAGGAGGTCATGAGGAGCGGTACAGGAGGACTCGCTGACCTCCTTATCGACTCCTACCAGGAGAAACTCATCCAGAGCCGACTGGAGCAGGAGCAGGAGAAAGAGCAGTGTGCACTGGAGGAATCTGAGGACGAAGAATGTGAAGAAGTCAGACAGGCAGAGTATGAGCCTAATGCAGAAGAGAAAGCCATGCTGAGAGAAGAGTTCCTCAGTCAGATGCACCAGCGCTTCTTGGATGGCAAAGATGACTTTAACTACAGTGAAGTGGATGAGAATCCAGATTATGATAATCTGGATATTGTAAGTCGTGATGCAGAGGAGCGTTACTTtgatgaagatgaggaggaggaggaggaagaagaagaggaggaggaagaacaAGAGGAGATGACACATTAGTCCATCAATACTCAAAATGATCtaacaacaaaacattgttttgatTTGCCgtacattgtcatttttttttctgatggatATTTTTGATTGTGTAGATTGTCTTTGTCCTTAATTAAAGAGTATTATTTTCAGTATGTTGTTGGGGTTTATTTGAAGAGTTCTCATTCCAGAGAAAGCACACATTCAGGTTGTTTATCTATGAAAAGAtgttatcataaaataaaataaaaatgtaggtTTA

Function

symbol description
ccdc97 Orthologous to human CCDC97 (coiled-coil domain containing 97).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-366 Orthologous to human CCDC97 (coiled-coil domain containing 97).

Ensembl:

ensembl_id ENSDARG00000074703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050448 True 1666 mRNA 0.45 6 39958407 39967412

Neighbor

gene id symbol gene type direction distance location
XLOC_025608 cacna1ha coding upstream 5966 39759130 ~ 39952441 (+)
XLOC_025609 BX649356.1 coding upstream 73451 39884819 ~ 39884956 (+)
XLOC_025607 epn2 coding upstream 268189 39656188 ~ 39690218 (+)
XLOC_025606 NA coding upstream 326193 39626833 ~ 39632214 (+)
XLOC_025605 NA coding upstream 334482 39618568 ~ 39623925 (+)
XLOC_025611 gfer coding downstream 194987 40162399 ~ 40168482 (+)
XLOC_025612 syngr3a coding downstream 202804 40170216 ~ 40180201 (+)
XLOC_025613 smcr8a coding downstream 287996 40255408 ~ 40258950 (+)
XLOC_025614 bud31 coding downstream 317186 40284598 ~ 40287841 (+)
XLOC_025615 cpsf4 coding downstream 322006 40289418 ~ 40295255 (+)
XLOC_025429 BX649540.1 misc upstream 9709371 30248739 ~ 30249036 (+)
XLOC_025601 BX537342.1 non-coding upstream 393908 39555762 ~ 39564499 (+)
XLOC_025599 NA non-coding upstream 693890 39258810 ~ 39264517 (+)
XLOC_025618 NA non-coding downstream 384261 40351673 ~ 40352408 (+)
XLOC_025619 NA non-coding downstream 436757 40404169 ~ 40404939 (+)
XLOC_025623 BX649559.1 non-coding downstream 824308 40791720 ~ 40794879 (+)
XLOC_025627 NA non-coding downstream 931212 40898624 ~ 40902157 (+)
XLOC_025628 NA non-coding downstream 977628 40945040 ~ 40948999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04125918_04128585 CCDC97 coding CI01000046 null 4125887 ~ 4128585 (-)