RNA id: TCONS_00050448


Basic Information

Item Value
RNA id TCONS_00050448
length 1666
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_025610
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39958407 ~ 39967412 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGGTCAATAGTAAACGTATACACGTGGATGTAAACGGAACGGAACCAACAATGTGGAAGAGAATGTTCCGCACGAATATATTAGTTGTTACACTGCTGAGCAGAACCTAAAacgcagttgttgttgttttaaatactGGCGATTTTAAAGGAATAATGCAAATTGGGTACTCGATAGATAGATGTGAATAGTAAACGTTACATCAGGCTGTTGTCAGAGTTACACCTTCAGTGGTCTTTCATAATAGCGTTGGCATGATTGGcagaataaacataaaatatcgAGACACATTTCGCTGATAAATCAACACTTGTTAGCACTTAAACTGTATTCTGAAATGTGGGGAGAAATCGAGCCCCGTGTCAACGGGCAAGAGAGCATGAAGAGCCGCGGGACTGACCAGAGACGGACACACTCTCCAGATCCACAGCAGAAGACAGTATTGTGGGGAGAAATCGAGTCCACCTCCAAACCTGACCCACCTACCTGGAGTCAACCTGCTTCTCAAGACAGTCTACCAGCTCTTCCTCATCCTCCTGAGACAAATGCCAGAGAGGTCAACAACACACCCAGCTGCTCTTCAGATGTACAGGATGAGCCGCCCATTAGTCTCAGCGCAATGATAGAGACTATAGCCGCCAGTGGGAGTCCAGTGAAAAGTCAGCAGCTGGGGGATCCGGACTTAACTCTGGAGGAGAAGAGGGAGGTTTTAATGGATCAGTACAGATCCAGGCCTTTAGTCTTTTTGGAGCGCTATCAGGCTCATCTGAAGCCAGAGCACATAGACGCTTTTTCACACCTGAGCAGCGACTGCAGGGTGCAGTATTACTGTAAGGAGATTCAGAGACGGGCATCTGGATCAGCTGACCGAAGAAGAGTTCGGAATCACCGGTATGCCGCTCTACGGGCTCTTCAGAAAGATGGCCAGTACTTCAGCGAGGAGCAGATGCGTGTACGAGACCCGCTGCTGTACGAGCAGTACATCGGTCAGTACCTTAGCGAAGAAGAGATCCTGCAGCGCTCAGAGGAGGTCATGAGGAGCGGTACAGGAGGACTCGCTGACCTCCTTATCGACTCCTACCAGGAGAAACTCATCCAGAGCCGACTGGAGCAGGAGCAGGAGAAAGAGCAGTGTGCACTGGAGGAATCTGAGGACGAAGAATGTGAAGAAGTCAGACAGGCAGAGTATGAGCCTAATGCAGAAGAGAAAGCCATGCTGAGAGAAGAGTTCCTCAGTCAGATGCACCAGCGCTTCTTGGATGGCAAAGATGACTTTAACTACAGTGAAGTGGATGAGAATCCAGATTATGATAATCTGGATATTGTAAGTCGTGATGCAGAGGAGCGTTACTTtgatgaagatgaggaggaggaggaggaagaagaagaggaggaggaagaacaAGAGGAGATGACACATTAGTCCATCAATACTCAAAATGATCtaacaacaaaacattgttttgatTTGCCgtacattgtcatttttttttctgatggatATTTTTGATTGTGTAGATTGTCTTTGTCCTTAATTAAAGAGTATTATTTTCAGTATGTTGTTGGGGTTTATTTGAAGAGTTCTCATTCCAGAGAAAGCACACATTCAGGTTGTTTATCTATGAAAAGAtgttatcataaaataaaataaaaatgtaggtTTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-366 Orthologous to human CCDC97 (coiled-coil domain containing 97).

Ensembl:

ensembl_id ENSDART00000099754

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050437 lncRNA upstream 326193 39626833 ~ 39632214 (+) True XLOC_025606
TCONS_00052746 lncRNA upstream 334482 39618568 ~ 39623925 (+) True XLOC_025605
TCONS_00050429 lncRNA upstream 393908 39555762 ~ 39564499 (+) True XLOC_025601
TCONS_00050426 lncRNA upstream 693890 39259803 ~ 39264517 (+) False XLOC_025599
TCONS_00050451 lncRNA downstream 196724 40164136 ~ 40166202 (+) True XLOC_025611
TCONS_00052365 lncRNA downstream 384261 40351673 ~ 40352408 (+) True XLOC_025618
TCONS_00052747 lncRNA downstream 436757 40404169 ~ 40404939 (+) True XLOC_025619
TCONS_00052748 lncRNA downstream 931212 40898624 ~ 40902157 (+) False XLOC_025627
TCONS_00052749 lncRNA downstream 931812 40899224 ~ 40902157 (+) False XLOC_025627
TCONS_00050445 mRNA upstream 5966 39853788 ~ 39952441 (+) False XLOC_025608
TCONS_00050447 mRNA upstream 12132 39922602 ~ 39946275 (+) True XLOC_025608
TCONS_00050444 mRNA upstream 80416 39759130 ~ 39877991 (+) False XLOC_025608
TCONS_00050442 mRNA upstream 272430 39663987 ~ 39685977 (+) False XLOC_025607
TCONS_00050450 mRNA downstream 196717 40164129 ~ 40168482 (+) False XLOC_025611
TCONS_00050452 mRNA downstream 202804 40170216 ~ 40180201 (+) True XLOC_025612
TCONS_00050453 mRNA downstream 287996 40255408 ~ 40258950 (+) True XLOC_025613
TCONS_00050454 mRNA downstream 317186 40284598 ~ 40287841 (+) True XLOC_025614
TCONS_00050455 mRNA downstream 322006 40289418 ~ 40295255 (+) True XLOC_025615
TCONS_00050446 other upstream 73451 39884819 ~ 39884956 (+) True XLOC_025609
TCONS_00050436 other upstream 351930 39600624 ~ 39606477 (+) True XLOC_025604
TCONS_00050432 other upstream 387552 39568488 ~ 39570855 (+) True XLOC_025602
TCONS_00050423 other upstream 775545 39182746 ~ 39182862 (+) True XLOC_025598
TCONS_00050415 other upstream 2169462 37788861 ~ 37788945 (+) True XLOC_025591
TCONS_00050449 other downstream 194987 40162399 ~ 40168381 (+) False XLOC_025611
TCONS_00050463 other downstream 824308 40791720 ~ 40794879 (+) False XLOC_025623
TCONS_00050464 other downstream 824334 40791746 ~ 40792877 (+) False XLOC_025623
TCONS_00050465 other downstream 824334 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050466 other downstream 824334 40791746 ~ 40793552 (+) False XLOC_025623

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_04125918_04128585.mRNA True 1003 mRNA 0.51 5 CI01000046 4125887 ~ 4128585 (-)