XLOC_025604 (prpsap2)


Basic Information

Item Value
gene id XLOC_025604
gene name prpsap2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39600562 ~ 39613226 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050434
ttttgaaagctcTTCCATCGAGCAGCCATCTTAAGTGTTTCTTGTGGGTAGCAAAGTTCACATTGTTGCATGTGATACAGTAACCAAGCGAAGGGATCGATTTAAAGATTAAAACTGGAAAGTCTGCTGTTAAACTAACAGTGTGCCTGTGGTCCTGTTGTTAGGAAGGGCTCAGCAGTGCCTGGGTGCCCAGGGAGCCACTGCCTGAGTCCCAAGAGGTCGACCTAAAGCAAACACTGGACATGAGTGCTCCTAAAGGAGGCCTGGTCATCTTCACGGCCAACTCCAACCCCTCCAGCAGAGAGCTGGCCCGGAGGATCGCAGAGCGATTGGGGGTGGAGCTTGGGAAGGTGCAGGTCTATCAGGAGGCGAACAGAGAAACAAGGGTTCAGATTGAAGAGTCTGTGCGCGGCAAAGATGTTTTCATCATCCAGACCGTGTCCAAGGATGTTAACACCACCATCATGGAGCTGCTCATTATGGTGTACGCCTGCAGGACGTCCTGCGCTCGAAACATCATCGGCGTCATCCCCTATTTCCCCTACAGCAAACAGTGCAAAATGAGGAAGAGAGGCTCCATCGTCTCCAAACTGTTGGCCTCAATGATGTGTAAAGCTGGTCTGACTCATCTCATTACTATGGATTTGCATCAAAAGGAAATCCAGGGTTTCTTCAACATTCCAGTGGATAATCTCCGGGCCTCTCCATTCCTGCTGCAGTACATCCAGGAAGAAATTCCTGATTACAGAAATGCTGTAATTGTGGCC
>TCONS_00050435
TCTTAAGTGTTTCTTGTGGGTAGCAAAGTTCACATTGTTGCATGTGATACAGTAACCAAGCGAAGGGATCGATTTAAAGATTAAAACTGGAAGGGCTCAGCAGTGCCTGGGTGCCCAGGGAGCCACTGCCTGAGTCCCAAGAGGTCGACCTAAAGCAAACACTGGACATGAGTGCTCCTAAAGGAGGCCTGGTCATCTTCACGGCCAACTCCAACCCCTCCAGCAGAGAGCTGGCCCGGAGGATCGCAGAGCGATTGGGGGTGGAGCTTGGGAAGGTGCAGGTCTATCAGGAGGCGAACAGAGAAACAAGGGTTCAGATTGAAGAGTCTGTGCGCGGCAAAGATGTTTTCATCATCCAGACCGTGTCCAAGGATGTTAACACCACCATCATGGAGCTGCTCATTATGGTGTACGCCTGCAGGACGTCCTGCGCTCGAAACATCATCGGCGTCATCCCCTATTTCCCCTACAGCAAACAGTGCAAAATGAGGAAGAGAGGCTCCATCGTCTCCAAACTGTTGGCCTCAATGATGTGTAAAGCTGGTCTGACTCATCTCATTACTATGGATTTGCATCAAAAGGAAATCCAGGGTTTCTTCAACATTCCAGTGGATAATCTCCGGGCCTCTCCATTCCTGCTGCAGTACATCCAGGAAGAAATTCCTGATTACAGAAATGCTGTAATTGTGGCCAAATCTCCAGCATCAGCCAAAAGGGCCCAGTCATTTGCTGAAAGATTGCGTCTGGGCATTGCTGTGATTCACGGTGAAGCACAGGATGCAGAATCAGACCTGGTTGATGGACGCCATTCACCACCTACTGTCAAAAACATTGGCGCCATCCATCCAAGCCTAGAAATACCATTGCTGATTCCCAAAGAAAAACCACCGATAACTGTAGTTGGAGATGTAGGAGGACGAATTGCCATCATAGTGGATGACATCATTGATGATGTTGACAGTTTCCTAGCAGCCGCCGAAACTCTGAAAGAAAGAGGCGCCTACAAGATCTTCGTGATGGCCACTCATGGGATCCTCTCCTCAGATGCTCCTCGACTAATAGAGGAGTCGGCTATAGACGAGGTGGTTGTCACCAACACCATTCCACATGAGATCCAAAAACTCCAGTGTCCCAAGATCAAAACAGTGGACATCAGCATGATCCTGTCAGAAGCCATTCGCCGCATCCACAATGGAGAATCCATGTCTTACCTGTTTCGTAATATAGGTATGGATGATTAGCAGGTTCTTGTACAGTCAGTCATAGGTCAAGAGTTTTTTTCTGTCCCTATTGCTTGTGTCATTAACCGTTTCTCTGTTTGTCATCTCTCCAAACCGCttgttttatgtgtaatattttgaaataataatagtaCGCTCGAAGAACCAGGATGTGTAAAGGGTTGTTGACCAGAAAATGAttatactgtcatcatttactcatcctccatagaTATTTCTAAATAACGATAAAAACTGGAGGCCATTGActactattgtatttttttttttactatggatgcTTTCAACaatcttcaaagtatcttcttttgagttcaacgaaaataaaagaaactcataaaggtttgaaagcaCTCAGAGGGTGAATAAATGTTGACGTGTCATTTGCTTTCCCTTTCAGTCTTGCGTGCTAATGTGAAAACAGGCTTGAAGTGCAGGAATTTTTCACCTCGTGATCTCAAATGTTGTCACTTTTTAAGATTTCGATTTAAAGGGAGAACCACTGGATGCTAAAAGGACATCTTCGGCTCTTTTAGCTGTAGATCTTCTGTCTTttctcatttttctttttaatatttaaagaacGGATAACTCCACTGTGTGGCCAACAACTCCAAAATGTTTCCAATTCAGAACTCTATGCTGTGACATATCAGTGTCAGTGCCTCATGAATTGTGCGTTTTCGGTGCCACTAGTTGATTTGTGTTCTGTCCGTGTTAGTGCTGatgttaaattaacatttattttgtacaCGCAAGGTACGTTCATAGATTTCAATATAGTGCTTAAGATTGAAACTAAAGCCTAATGCACTTGACTGAATGTTTTTTCTTGCTCGATTCTTCTACTAACACTTTGACACGAGAGTTTAGGTTTGAAGTTTTGCCAGTAACGGGACCGTGGAAATGTTTGCCTCATAAATGTTTGGTCATAGCGGCCAGAATTTGCCTCTGAGAACTTCTCATTTTCAAATGAAATGCAGGGTTTTTGTTATGTGACTAATATGTCAGGCTTTTGTATTTATTCACAGCACTTGATGACGATGAATAAACAGGTTAAAGACTTACTGA
>TCONS_00050436
TTGTTGCATGTGATACAGTAACCAAGCGAAGGGATCGATTTAAAGATTAAAACTGGAAAGTCTGCTGTTAAACTAACAGTGTGCCTGTGGTCCTGTTGTTAGGAAGGGCTCAGCAGTGCCTGGGTGCCCAGGGAGCCACTGCCTGAGTCCCAAGAGGTCGACCTAAAGCAAACACTGGACATGAGTGCTCCTAAAGGAGGCCTGGTCATCTTCACGGCCAACTCCAACCCCTCCAGCAGAGAGCTGGCCCGGAGGATCGCAGAGTGAGTCCACCAACAGCAGAGCTCTTCACACTGGGCTTCGGGGTCCGGCCCTTAAGAAAgttaaccatggttttactacaaTTGAAACCAAAAGACCATGGCGATTGGGGGTGGAGCTTGGGAAGGTGCAGGTCTATCAGGAGGCGAACAGAGAAACAAGGGTTCAGATTGAAGAGTCTGTGCGCGGCAAAGATGTTTTCATCATCCAGACCGTGTCCAAAATAGATGAGTCTTACCACATAAGGACTCAAAGAGAAAGATTTACTTAAAGATTTTTGCTCAAAAAAAGGATGTTAACACCACCATCATGGAGCTGCTCATTATGGTGTACGCCTGCAGGACGTCCTGCGCTCGAAACATCATCGGCGTCATCCCCTATTTCCCCTACAGCAAACAGTGCAAAATGAGGAAGAGAGGCTCCATCGTCTCCAAACTGTTGGCCTCAATGATGTGTAAAGCTGGTCTGACTCATCTCATTACTATGGATTTGCATCAAAAGGAAATCCAGGGTTTCTTCAACATTCCAGTGGA

Function

symbol description
prpsap2 Predicted to enable ribose phosphate diphosphokinase activity. Predicted to be involved in 5-phosphoribose 1-diphosphate biosynthetic process and purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleoside metabolic process and nucleotide biosynthetic process. Predicted to be part of ribose phosphate diphosphokinase complex. Predicted to be active in cytoplasm. Orthologous to human PRPSAP2 (phosphoribosyl pyrophosphate synthetase associated protein 2).

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process biological_process
GO:0002189 ribose phosphate diphosphokinase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2077 Predicted to enable ribose phosphate diphosphokinase activity. Predicted to be involved in 5-phosphoribose 1-diphosphate biosynthetic process and purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleoside metabolic process and nucleotide biosynthetic process. Predicted to be part of ribose phosphate diphosphokinase complex. Predicted to be active in cytoplasm. Orthologous to human PRPSAP2 (phosphoribosyl pyrophosphate synthetase associated protein 2).

Ensembl:

ensembl_id ENSDARG00000019326

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050434 False 767 mRNA 0.50 7 39600562 39607870
TCONS_00050435 False 2312 mRNA 0.43 11 39600590 39613226
TCONS_00050436 True 794 processed_transcript 0.48 7 39600624 39606477

Neighbor

gene id symbol gene type direction distance location
XLOC_025603 cln3 coding upstream 1223 39579393 ~ 39599339 (+)
XLOC_025602 aldoaa coding upstream 23510 39566999 ~ 39577052 (+)
XLOC_025601 BX537342.1 coding upstream 36063 39555762 ~ 39564499 (+)
XLOC_025600 zgc:165423 coding upstream 50473 39540014 ~ 39550089 (+)
XLOC_025599 NA coding upstream 336045 39258810 ~ 39264517 (+)
XLOC_025605 NA coding downstream 5342 39618568 ~ 39623925 (+)
XLOC_025606 NA coding downstream 13607 39626833 ~ 39632214 (+)
XLOC_025607 epn2 coding downstream 42962 39656188 ~ 39690218 (+)
XLOC_025608 cacna1ha coding downstream 145904 39759130 ~ 39952441 (+)
XLOC_025609 BX649356.1 coding downstream 271593 39884819 ~ 39884956 (+)
XLOC_025429 BX649540.1 misc upstream 9351526 30248739 ~ 30249036 (+)
XLOC_025598 CR392006.1 non-coding upstream 417700 39182746 ~ 39182862 (+)
XLOC_025596 NA non-coding upstream 547852 39050589 ~ 39052710 (+)
XLOC_025591 CR388062.4 non-coding upstream 1811617 37788861 ~ 37788945 (+)
XLOC_025618 NA non-coding downstream 738447 40351673 ~ 40352408 (+)
XLOC_025619 NA non-coding downstream 790943 40404169 ~ 40404939 (+)

Expression


Co-expression Network