Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050449 |
| length | 825 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 3 |
| gene id | XLOC_025611 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 40162399 ~ 40168482 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0050660 | flavin adenine dinucleotide binding | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| GO:0015035 | protein disulfide oxidoreductase activity | molecular_function |
| GO:0016971 | flavin-linked sulfhydryl oxidase activity | molecular_function |
| GO:0016972 | thiol oxidase activity | molecular_function |
| id | description |
|---|---|
| ko03029 | Mitochondrial biogenesis |
| id | description |
|---|---|
| ZDB-GENE-060810-186 | Enables flavin-linked sulfhydryl oxidase activity and identical protein binding activity. Acts upstream of or within heart development and liver development. Located in mitochondrion. Is expressed in several structures, including fin; gill; head; liver and biliary system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in kidney failure and renal fibrosis. Orthologous to human GFER (growth factor, augmenter of liver regeneration). |
| ensembl_id | ENSDART00000147536 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050437 | lncRNA | upstream | 530185 | 39626833 ~ 39632214 (+) | True | XLOC_025606 |
| TCONS_00052746 | lncRNA | upstream | 538474 | 39618568 ~ 39623925 (+) | True | XLOC_025605 |
| TCONS_00050429 | lncRNA | upstream | 597900 | 39555762 ~ 39564499 (+) | True | XLOC_025601 |
| TCONS_00050426 | lncRNA | upstream | 897882 | 39259803 ~ 39264517 (+) | False | XLOC_025599 |
| TCONS_00052365 | lncRNA | downstream | 183292 | 40351673 ~ 40352408 (+) | True | XLOC_025618 |
| TCONS_00052747 | lncRNA | downstream | 235788 | 40404169 ~ 40404939 (+) | True | XLOC_025619 |
| TCONS_00052748 | lncRNA | downstream | 730243 | 40898624 ~ 40902157 (+) | False | XLOC_025627 |
| TCONS_00052749 | lncRNA | downstream | 730843 | 40899224 ~ 40902157 (+) | False | XLOC_025627 |
| TCONS_00052750 | lncRNA | downstream | 730871 | 40899252 ~ 40902157 (+) | False | XLOC_025627 |
| TCONS_00050448 | mRNA | upstream | 194987 | 39958407 ~ 39967412 (+) | True | XLOC_025610 |
| TCONS_00050445 | mRNA | upstream | 209958 | 39853788 ~ 39952441 (+) | False | XLOC_025608 |
| TCONS_00050447 | mRNA | upstream | 216124 | 39922602 ~ 39946275 (+) | True | XLOC_025608 |
| TCONS_00050444 | mRNA | upstream | 284408 | 39759130 ~ 39877991 (+) | False | XLOC_025608 |
| TCONS_00050442 | mRNA | upstream | 476422 | 39663987 ~ 39685977 (+) | False | XLOC_025607 |
| TCONS_00050452 | mRNA | downstream | 1835 | 40170216 ~ 40180201 (+) | True | XLOC_025612 |
| TCONS_00050453 | mRNA | downstream | 87027 | 40255408 ~ 40258950 (+) | True | XLOC_025613 |
| TCONS_00050454 | mRNA | downstream | 116217 | 40284598 ~ 40287841 (+) | True | XLOC_025614 |
| TCONS_00050455 | mRNA | downstream | 121037 | 40289418 ~ 40295255 (+) | True | XLOC_025615 |
| TCONS_00050456 | mRNA | downstream | 125125 | 40293506 ~ 40306031 (+) | True | XLOC_025616 |
| TCONS_00050446 | other | upstream | 277443 | 39884819 ~ 39884956 (+) | True | XLOC_025609 |
| TCONS_00050436 | other | upstream | 555922 | 39600624 ~ 39606477 (+) | True | XLOC_025604 |
| TCONS_00050432 | other | upstream | 591544 | 39568488 ~ 39570855 (+) | True | XLOC_025602 |
| TCONS_00050423 | other | upstream | 979537 | 39182746 ~ 39182862 (+) | True | XLOC_025598 |
| TCONS_00050415 | other | upstream | 2373454 | 37788861 ~ 37788945 (+) | True | XLOC_025591 |
| TCONS_00050463 | other | downstream | 623339 | 40791720 ~ 40794879 (+) | False | XLOC_025623 |
| TCONS_00050464 | other | downstream | 623365 | 40791746 ~ 40792877 (+) | False | XLOC_025623 |
| TCONS_00050465 | other | downstream | 623365 | 40791746 ~ 40792988 (+) | False | XLOC_025623 |
| TCONS_00050466 | other | downstream | 623365 | 40791746 ~ 40793552 (+) | False | XLOC_025623 |
| TCONS_00050467 | other | downstream | 623365 | 40791746 ~ 40794840 (+) | False | XLOC_025623 |
