Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050444 |
| length | 1104 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 10 |
| gene id | XLOC_025608 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 39759130 ~ 39952441 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019228 | neuronal action potential | biological_process |
| GO:0070509 | calcium ion import | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0086010 | membrane depolarization during action potential | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0045956 | positive regulation of calcium ion-dependent exocytosis | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0001518 | voltage-gated sodium channel complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| GO:0005248 | voltage-gated sodium channel activity | molecular_function |
| GO:0005261 | cation channel activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| GO:0008332 | low voltage-gated calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-130103-1 | Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport; flagellated sperm motility; and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in adaxial cell; diencephalon; heart; and retinal neural layer. Human ortholog(s) of this gene implicated in childhood absence epilepsy and primary hyperaldosteronism. Orthologous to human CACNA1H (calcium voltage-gated channel subunit alpha1 H). |
| ensembl_id | ENSDART00000185202 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050437 | lncRNA | upstream | 126916 | 39626833 ~ 39632214 (+) | True | XLOC_025606 |
| TCONS_00052746 | lncRNA | upstream | 135205 | 39618568 ~ 39623925 (+) | True | XLOC_025605 |
| TCONS_00050429 | lncRNA | upstream | 194631 | 39555762 ~ 39564499 (+) | True | XLOC_025601 |
| TCONS_00050426 | lncRNA | upstream | 494613 | 39259803 ~ 39264517 (+) | False | XLOC_025599 |
| TCONS_00050451 | lncRNA | downstream | 286145 | 40164136 ~ 40166202 (+) | True | XLOC_025611 |
| TCONS_00052365 | lncRNA | downstream | 473682 | 40351673 ~ 40352408 (+) | True | XLOC_025618 |
| TCONS_00052747 | lncRNA | downstream | 526178 | 40404169 ~ 40404939 (+) | True | XLOC_025619 |
| TCONS_00052748 | lncRNA | downstream | 1020633 | 40898624 ~ 40902157 (+) | False | XLOC_025627 |
| TCONS_00052749 | lncRNA | downstream | 1021233 | 40899224 ~ 40902157 (+) | False | XLOC_025627 |
| TCONS_00050439 | mRNA | upstream | 68912 | 39656249 ~ 39690218 (+) | False | XLOC_025607 |
| TCONS_00050442 | mRNA | upstream | 73153 | 39663987 ~ 39685977 (+) | False | XLOC_025607 |
| TCONS_00050441 | mRNA | upstream | 73153 | 39663987 ~ 39685977 (+) | False | XLOC_025607 |
| TCONS_00050440 | mRNA | upstream | 73153 | 39663987 ~ 39685977 (+) | False | XLOC_025607 |
| TCONS_00050438 | mRNA | upstream | 79423 | 39656188 ~ 39679707 (+) | False | XLOC_025607 |
| TCONS_00050447 | mRNA | downstream | 44611 | 39922602 ~ 39946275 (+) | True | XLOC_025608 |
| TCONS_00050448 | mRNA | downstream | 80416 | 39958407 ~ 39967412 (+) | True | XLOC_025610 |
| TCONS_00050450 | mRNA | downstream | 286138 | 40164129 ~ 40168482 (+) | False | XLOC_025611 |
| TCONS_00050452 | mRNA | downstream | 292225 | 40170216 ~ 40180201 (+) | True | XLOC_025612 |
| TCONS_00050453 | mRNA | downstream | 377417 | 40255408 ~ 40258950 (+) | True | XLOC_025613 |
| TCONS_00050436 | other | upstream | 152653 | 39600624 ~ 39606477 (+) | True | XLOC_025604 |
| TCONS_00050432 | other | upstream | 188275 | 39568488 ~ 39570855 (+) | True | XLOC_025602 |
| TCONS_00050423 | other | upstream | 576268 | 39182746 ~ 39182862 (+) | True | XLOC_025598 |
| TCONS_00050415 | other | upstream | 1970185 | 37788861 ~ 37788945 (+) | True | XLOC_025591 |
| TCONS_00050414 | other | upstream | 1970570 | 37788476 ~ 37788560 (+) | True | XLOC_025590 |
| TCONS_00050446 | other | downstream | 6828 | 39884819 ~ 39884956 (+) | True | XLOC_025609 |
| TCONS_00050449 | other | downstream | 284408 | 40162399 ~ 40168381 (+) | False | XLOC_025611 |
| TCONS_00050463 | other | downstream | 913729 | 40791720 ~ 40794879 (+) | False | XLOC_025623 |
| TCONS_00050464 | other | downstream | 913755 | 40791746 ~ 40792877 (+) | False | XLOC_025623 |
| TCONS_00050465 | other | downstream | 913755 | 40791746 ~ 40792988 (+) | False | XLOC_025623 |
