RNA id: TCONS_00050454


Basic Information

Item Value
RNA id TCONS_00050454
length 1185
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_025614
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40284598 ~ 40287841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGGTGGACTACAGAATAACATCACAGCTTTACCATAATAAAACTATTGCTGATATTTGAGATACTCAGTAATTCATAACAAATGATATTAGCATTTGGATAAGTCGAAATATAACGCGGACAACAACTGTGGTTCGTGTTTATTTGTTAAAGAACAAAGACAGCTTGTTGACGTAACTTTGGTGTAATGAAATGCTGAAAGGACCTTTGGTGTGACGCCACCCCTCTGCGCCGGAGATCGGGGATGCTCTAGAGCAGCAGCTCGTTTTTTGCTAAATAGCGTCGAGTTGATTATATATTCCCAAAATAATATAATGCCGAAAGTAAAAAGGAGTAGAAAACCTCCTCCAGATGGGTGGGAGCTCATAGAACCGACTCTCGATGAGCTGGACCAGAAAATGCGCGAAGCTGAAACCGAGCCACATGAGGGCAAACGTAAAGTTGAGTCTCTGTGGCCAATCTTCCGACTTCACCACCAACGCAGCCGTTACATCTTCGACCTCTTCTACAAGAGGAAGGCCATCAGTCGAGAGCTCTATGAGTACTGCATCAGAGAGGGCTATGCAGACAAGAATCTGATCGCTAAATGGAAGAAACAGGGCTATGAAAATCTGTGCTGTCTGCGTTGCATTCAGACGCGGGACACTAACTTTGGAACAAACTGCATATGTAGGGTTCCCAAGGGCAAGCTTGAAGTGGGTCGTATCATTGAGTGCACTCACTGTGGATGCAGAGGATGTTCTGGATGAGTCTGCAGGAAAACAGCTTTCTGACTTTACTGAACTtttgatttgtatttttaatacatttattggtTTGTCATTTATGACGTTGGATCTCTTGTAATCGTATGATTATTGTTTGTGTATGCATTGATTTCtttttggtatttttattaaattgtgctGGATCTTAATCATTCTTTTTAATCAATCTTGTACTTTACATGTgctttataaaatatgtattttaaatagctttgctctagagaaaaaaaatattaaggtaGGGTTTAGATAGGCATTCCCATCCTATACAAATCaaaatatttgcttttttatttaattgtatttaatagcAGACGCATTTACCCAAACTGGCTTTCAAATGAGgacaatagaaataaaacaaactgatttaaAAGCAACAATGTTGTTTTAATACTAAAAAGTTCATCACAGTA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040720-3 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human BUD31 (BUD31 homolog).

Ensembl:

ensembl_id ENSDART00000009411

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050451 lncRNA upstream 118396 40164136 ~ 40166202 (+) True XLOC_025611
TCONS_00050437 lncRNA upstream 652384 39626833 ~ 39632214 (+) True XLOC_025606
TCONS_00052746 lncRNA upstream 660673 39618568 ~ 39623925 (+) True XLOC_025605
TCONS_00050429 lncRNA upstream 720099 39555762 ~ 39564499 (+) True XLOC_025601
TCONS_00050427 lncRNA upstream 1020081 39259852 ~ 39264517 (+) True XLOC_025599
TCONS_00052365 lncRNA downstream 63832 40351673 ~ 40352408 (+) True XLOC_025618
TCONS_00052747 lncRNA downstream 116328 40404169 ~ 40404939 (+) True XLOC_025619
TCONS_00052748 lncRNA downstream 610783 40898624 ~ 40902157 (+) False XLOC_025627
TCONS_00052749 lncRNA downstream 611383 40899224 ~ 40902157 (+) False XLOC_025627
TCONS_00052750 lncRNA downstream 611411 40899252 ~ 40902157 (+) False XLOC_025627
TCONS_00050453 mRNA upstream 25648 40255408 ~ 40258950 (+) True XLOC_025613
TCONS_00050452 mRNA upstream 104397 40170216 ~ 40180201 (+) True XLOC_025612
TCONS_00050450 mRNA upstream 116116 40164129 ~ 40168482 (+) False XLOC_025611
TCONS_00050448 mRNA upstream 317186 39958407 ~ 39967412 (+) True XLOC_025610
TCONS_00050445 mRNA upstream 332157 39853788 ~ 39952441 (+) False XLOC_025608
TCONS_00050455 mRNA downstream 1577 40289418 ~ 40295255 (+) True XLOC_025615
TCONS_00050456 mRNA downstream 5665 40293506 ~ 40306031 (+) True XLOC_025616
TCONS_00050457 mRNA downstream 27569 40315410 ~ 40349733 (+) False XLOC_025617
TCONS_00050458 mRNA downstream 27572 40315413 ~ 40349500 (+) True XLOC_025617
TCONS_00050459 mRNA downstream 119511 40407352 ~ 40488846 (+) False XLOC_025620
TCONS_00050449 other upstream 116217 40162399 ~ 40168381 (+) False XLOC_025611
TCONS_00050446 other upstream 399642 39884819 ~ 39884956 (+) True XLOC_025609
TCONS_00050436 other upstream 678121 39600624 ~ 39606477 (+) True XLOC_025604
TCONS_00050432 other upstream 713743 39568488 ~ 39570855 (+) True XLOC_025602
TCONS_00050423 other upstream 1101736 39182746 ~ 39182862 (+) True XLOC_025598
TCONS_00050463 other downstream 503879 40791720 ~ 40794879 (+) False XLOC_025623
TCONS_00050464 other downstream 503905 40791746 ~ 40792877 (+) False XLOC_025623
TCONS_00050465 other downstream 503905 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050466 other downstream 503905 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050467 other downstream 503905 40791746 ~ 40794840 (+) False XLOC_025623

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_03951775_03952660.mRNA True 1412 mRNA 0.37 4 CI01000046 3951181 ~ 3953043 (-)