XLOC_025621 (fscn1a)


Basic Information

Item Value
gene id XLOC_025621
gene name fscn1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40576447 ~ 40589489 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050461
agagagagagagagaggcgcgCGCACGCTCGCTCCAGCAAACAAAGAGACCCGTCAACATCATCCACGGTGCACCAGCAGATCCCGCTCCAGCAAGGCCACGAGCTGCAACCATGACTGCAAACGGAACCAGCGACATGCTCAAAATCCAATTCGGATTGATCAACTGCGGGAACAAGTACCTCACGGCCGAGACCTTCGGCTTCAAGATCAATGCATCAGCCACCAGCATGAAGAAGAAGCAGATTTGGACCCTGGAGCAAGACGGAGATGATTCAAACATGTTCTTCCTGAAGAGCCACCTGGGACGGTACATCGCAGCCGACAAAGACGGCAACGTGACGGGTGACAGCGAGACCCCGGGCGAGGACTGTCGCTTCATAATCACCGCACATGATGATGGGCGCTGGTCACTGCAGTCCGAGCCGCACAAGCGCTACCTGGGCGGCACCGAGGACAGGATAACCTGCTTCGCCCAGACCATCTCCATCGCGGAGAAATGGAGCGTGCACATCGCCATGCACCCACAGGTCAACATCTTCAGCGTGACTAGAAAAAGGTACGCGCACCTGAGCTCTGAGCAGAACGAGATAGCCATCGACCGGGATGTACCCTGGGGCGTGGATTCCCTCATCACCCTGGTCTTCCAGGACCAGAGGTACCACCTTCAGACCTCCGACAACCGCTTCCTGAAGAACGACGGCAGCCTGTCCCAGACGGCGGATAAGACTACGGGTTACACGCTGGAGTTCAGGTCTGGGAAGGTGGCCTTCAGAGACTGCACCGGGAAGTACCTAGCTCCCTCTGGTCCCAGTGGAACCATGAAGTCCGGCAAGAGCATGAAGGTTGGCAAGGATGAGCTCTTCGTTCTGGAGCAGAGCCATCCGCAAGTGGTCCTCACCGCTGGCAACGACAGGAATGTGTCCACCAGACAAGGCATGGATCTCTCTGCTAACCAAGATGAGGAAGGAGACCAGGAGACCTTCCAGATGGAGATCAGTAAGGACACAAAGAAGTGTGCCTTTAGGACCTGCACTGGCAAATACTGGACCCTCACAGCCAACGGTGGCCTCCAATGCACTGCCTCTACCAAGTCTGCTAACTGCTACTTTGACATTGAGTGGCGTGGGAAGAAGATAACCCTGCGTGCCACCAATGGAAAATATGTGGCCGCCAAAAAGAATGGACAGCTCGCTGCCACTATTGACTCAGCAGGTGAGACCGAGGAGTTCCTGATGAAGCTCATCAATAGGCCTCTTATTGTGCTGAGAGGAGAACATGGCTTCATTGGCTGCAGGAGAGTGACTGGAACTCTGGACTCCAACCGCTCCTCTTATGACGTTTTTGGGTTGGACTTTAATGATGGAGCCTACAGCTTACGAGATTGCACAGGGAAGTACTGGATGGTGGGCAGTGAATCAAACGTGCTGAGCAGTAGCGACACCCCGGTAGACTTCTTCCTGGAGTTTTGCGACTACAACAAAGTTGCGATCAAGACAACAGAGGGGAAATACCTGAAGGGCGATCACGCTGGTGTTCTGAAGGCCAACGCCGACGATCTGGACAGCTCCACTATGTGGGAGTACTAAGAGCACTCAAGTAACCACTGTGGCTTTATCTTTCAGTTTTTTCCCTTTTCTGTTATGCGTTTTGAATGGTTTCTGAATACAAGCGAGCACACGGGGCTAATAGCAGAGAGAAACCCAAAGGTGAAGGGGCTTACTTTTAGTCACGTATACTCCAGTCTGTCTAAGTACTTTGGGTGCCATGGTTTTCGATGACCTGACGAGTGGCCAAAATGGGGACTTCTGGGACTTAACTGGCATCCAAATTTGTGTTGTGTGGTTAAAGCACATCTCATGTCATCTCTTAATCTGTCCTAATATTTGACTGGCATGTCTCCACTTCTCTGGAAGATCGGCTATGCGGGCGCCACAAGATTTTTGATGTACCAGATTGTAGCGTGATCCTTCCCCCTCGTCTTTGCACAGTCCCGTACGAGCCTCACACTCTTAAATATTAACACATATAGTGAAATATGTCAAAGAAAAACCTTGTGACTGTGAGCTATTGATGTATGCCTCCTGTTATAATGCCAGTCACAAGTACCTACCCTCTCGATCAGAGGGCGAAGGCAGTATTTACAGGTAAATGTATGaatgttttgcttttctttttccaTAAAGAGCAATGAAGGATGGCTCTTAAACCACTGAAATGAgctatattgttttgtttttgtgacgTTTGAAGTACGGCAGTGATCTGATGTGTGCTGCCAAACTATTTGTGCCATTAGAAtcattttaatgtttcaaaaGAGGAAAACCGAGACAAACTGGATTGGTACTGTACAGTCCCTCATCTCAAGATTAGAGTTAAACCTAGAATTGTAAATGGGTGTGGGAAAGAAATATAGATATTAAAATGAGAAATGTTTTCTGCAACTCAGAAGTGATGTCATCGTTAGATTGTGTGCTGTAGCTGTGGATGTGATGATACCGACATGAGGTATGTTGTTGCAGGTTCAACACAGTATTTATGGTAAATTAAACCACTTTTCCCTCTCGATCCTGACAAATCCTAATGGAATGGCGGGTCTGCGTTCACTGGAGACGTCTGGAAGCTGGGAAAGTCACTGGAAATCTCATCTAAcacttgtgttgttgtttttcgaGAAGGCACAGACATTATCATGAACCTTATTCTGTTCTCCACATTAGTACATTAACACATACTTAAAAAACCAAAATGAAGACATTATCACCGATTAAAGACTTAAACTGGTGCTTAATTTGACTTCAGGTGTGCATTAAACGGAGCCACTTTATACCTGCTTAAGTACTGTTTATACCACTTCTTGAATATCATTTCTTATAATAACCCCGCATTGCTAAGGGAATGATAATGACTGTGCCTTATATAAGGCCattaagagagaaaaaaagacattCCACATCTATACTTTGTAAAGACTTTACAAATgtctttttatattgttttgataTTATGGTTCTGTTTCCTCATGTGCCATGGGTACAAATGAAATCCGGAAATAAATGCGGTTTGAATATgaaa

Function

symbol description
fscn1a Enables actin filament binding activity; protein-macromolecule adaptor activity; and signaling receptor binding activity. Acts upstream of or within several processes, including animal organ development; epiboly; and pharyngeal system development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including lamellipodium; microvillus; and ruffle. Is expressed in several structures, including head; mesoderm; nervous system; neural crest; and neural plate. Orthologous to human FSCN1 (fascin actin-bundling protein 1).

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0090504 epiboly biological_process
GO:0001726 ruffle cellular_component
GO:0031253 cell projection membrane cellular_component
GO:0030426 growth cone cellular_component
GO:0030175 filopodium cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031009-1 Enables actin filament binding activity; protein-macromolecule adaptor activity; and signaling receptor binding activity. Acts upstream of or within several processes, including animal organ development; epiboly; and pharyngeal system development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including lamellipodium; microvillus; and ruffle. Is expressed in several structures, including head; mesoderm; nervous system; neural crest; and neural plate. Orthologous to human FSCN1 (fascin actin-bundling protein 1).

Ensembl:

ensembl_id ENSDARG00000059680

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050461 True 3077 mRNA 0.47 5 40576447 40589489

Neighbor

gene id symbol gene type direction distance location
XLOC_025620 tnrc18 coding upstream 87601 40407352 ~ 40488846 (+)
XLOC_025619 NA coding upstream 171508 40404169 ~ 40404939 (+)
XLOC_025618 NA coding upstream 224039 40351673 ~ 40352408 (+)
XLOC_025617 slc29a4 coding upstream 226714 40315410 ~ 40349733 (+)
XLOC_025616 AL928657.2 coding upstream 270416 40293506 ~ 40306031 (+)
XLOC_025622 BX649559.2 coding downstream 82753 40672242 ~ 40688451 (+)
XLOC_025623 BX649559.1 coding downstream 202231 40791720 ~ 40794879 (+)
XLOC_025624 arpc1a coding downstream 206621 40796110 ~ 40804455 (+)
XLOC_025625 arpc1b coding downstream 219522 40809011 ~ 40820612 (+)
XLOC_025626 mmd2a coding downstream 252408 40841897 ~ 40871366 (+)
XLOC_025429 BX649540.1 misc upstream 10327411 30248739 ~ 30249036 (+)
XLOC_025609 BX649356.1 non-coding upstream 691491 39884819 ~ 39884956 (+)
XLOC_025606 NA non-coding upstream 944233 39626833 ~ 39632214 (+)
XLOC_025605 NA non-coding upstream 952522 39618568 ~ 39623925 (+)
XLOC_025627 NA non-coding downstream 309135 40898624 ~ 40902157 (+)
XLOC_025628 NA non-coding downstream 355551 40945040 ~ 40948999 (+)
XLOC_025629 NA non-coding downstream 453534 41043023 ~ 41066414 (+)
XLOC_025630 BX537310.1 non-coding downstream 910920 41500409 ~ 41500525 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03761959_03768003 FSCN1, FSCN1A coding CI01000046 null 3760451 ~ 3768116 (-)
bowfin (Amia calva) AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding CM030135.1 CM030135.1 13639723 ~ 13649092 (+)