RNA id: TCONS_00050461


Basic Information

Item Value
RNA id TCONS_00050461
length 3077
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_025621
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40576447 ~ 40589489 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagagagagagagaggcgcgCGCACGCTCGCTCCAGCAAACAAAGAGACCCGTCAACATCATCCACGGTGCACCAGCAGATCCCGCTCCAGCAAGGCCACGAGCTGCAACCATGACTGCAAACGGAACCAGCGACATGCTCAAAATCCAATTCGGATTGATCAACTGCGGGAACAAGTACCTCACGGCCGAGACCTTCGGCTTCAAGATCAATGCATCAGCCACCAGCATGAAGAAGAAGCAGATTTGGACCCTGGAGCAAGACGGAGATGATTCAAACATGTTCTTCCTGAAGAGCCACCTGGGACGGTACATCGCAGCCGACAAAGACGGCAACGTGACGGGTGACAGCGAGACCCCGGGCGAGGACTGTCGCTTCATAATCACCGCACATGATGATGGGCGCTGGTCACTGCAGTCCGAGCCGCACAAGCGCTACCTGGGCGGCACCGAGGACAGGATAACCTGCTTCGCCCAGACCATCTCCATCGCGGAGAAATGGAGCGTGCACATCGCCATGCACCCACAGGTCAACATCTTCAGCGTGACTAGAAAAAGGTACGCGCACCTGAGCTCTGAGCAGAACGAGATAGCCATCGACCGGGATGTACCCTGGGGCGTGGATTCCCTCATCACCCTGGTCTTCCAGGACCAGAGGTACCACCTTCAGACCTCCGACAACCGCTTCCTGAAGAACGACGGCAGCCTGTCCCAGACGGCGGATAAGACTACGGGTTACACGCTGGAGTTCAGGTCTGGGAAGGTGGCCTTCAGAGACTGCACCGGGAAGTACCTAGCTCCCTCTGGTCCCAGTGGAACCATGAAGTCCGGCAAGAGCATGAAGGTTGGCAAGGATGAGCTCTTCGTTCTGGAGCAGAGCCATCCGCAAGTGGTCCTCACCGCTGGCAACGACAGGAATGTGTCCACCAGACAAGGCATGGATCTCTCTGCTAACCAAGATGAGGAAGGAGACCAGGAGACCTTCCAGATGGAGATCAGTAAGGACACAAAGAAGTGTGCCTTTAGGACCTGCACTGGCAAATACTGGACCCTCACAGCCAACGGTGGCCTCCAATGCACTGCCTCTACCAAGTCTGCTAACTGCTACTTTGACATTGAGTGGCGTGGGAAGAAGATAACCCTGCGTGCCACCAATGGAAAATATGTGGCCGCCAAAAAGAATGGACAGCTCGCTGCCACTATTGACTCAGCAGGTGAGACCGAGGAGTTCCTGATGAAGCTCATCAATAGGCCTCTTATTGTGCTGAGAGGAGAACATGGCTTCATTGGCTGCAGGAGAGTGACTGGAACTCTGGACTCCAACCGCTCCTCTTATGACGTTTTTGGGTTGGACTTTAATGATGGAGCCTACAGCTTACGAGATTGCACAGGGAAGTACTGGATGGTGGGCAGTGAATCAAACGTGCTGAGCAGTAGCGACACCCCGGTAGACTTCTTCCTGGAGTTTTGCGACTACAACAAAGTTGCGATCAAGACAACAGAGGGGAAATACCTGAAGGGCGATCACGCTGGTGTTCTGAAGGCCAACGCCGACGATCTGGACAGCTCCACTATGTGGGAGTACTAAGAGCACTCAAGTAACCACTGTGGCTTTATCTTTCAGTTTTTTCCCTTTTCTGTTATGCGTTTTGAATGGTTTCTGAATACAAGCGAGCACACGGGGCTAATAGCAGAGAGAAACCCAAAGGTGAAGGGGCTTACTTTTAGTCACGTATACTCCAGTCTGTCTAAGTACTTTGGGTGCCATGGTTTTCGATGACCTGACGAGTGGCCAAAATGGGGACTTCTGGGACTTAACTGGCATCCAAATTTGTGTTGTGTGGTTAAAGCACATCTCATGTCATCTCTTAATCTGTCCTAATATTTGACTGGCATGTCTCCACTTCTCTGGAAGATCGGCTATGCGGGCGCCACAAGATTTTTGATGTACCAGATTGTAGCGTGATCCTTCCCCCTCGTCTTTGCACAGTCCCGTACGAGCCTCACACTCTTAAATATTAACACATATAGTGAAATATGTCAAAGAAAAACCTTGTGACTGTGAGCTATTGATGTATGCCTCCTGTTATAATGCCAGTCACAAGTACCTACCCTCTCGATCAGAGGGCGAAGGCAGTATTTACAGGTAAATGTATGaatgttttgcttttctttttccaTAAAGAGCAATGAAGGATGGCTCTTAAACCACTGAAATGAgctatattgttttgtttttgtgacgTTTGAAGTACGGCAGTGATCTGATGTGTGCTGCCAAACTATTTGTGCCATTAGAAtcattttaatgtttcaaaaGAGGAAAACCGAGACAAACTGGATTGGTACTGTACAGTCCCTCATCTCAAGATTAGAGTTAAACCTAGAATTGTAAATGGGTGTGGGAAAGAAATATAGATATTAAAATGAGAAATGTTTTCTGCAACTCAGAAGTGATGTCATCGTTAGATTGTGTGCTGTAGCTGTGGATGTGATGATACCGACATGAGGTATGTTGTTGCAGGTTCAACACAGTATTTATGGTAAATTAAACCACTTTTCCCTCTCGATCCTGACAAATCCTAATGGAATGGCGGGTCTGCGTTCACTGGAGACGTCTGGAAGCTGGGAAAGTCACTGGAAATCTCATCTAAcacttgtgttgttgtttttcgaGAAGGCACAGACATTATCATGAACCTTATTCTGTTCTCCACATTAGTACATTAACACATACTTAAAAAACCAAAATGAAGACATTATCACCGATTAAAGACTTAAACTGGTGCTTAATTTGACTTCAGGTGTGCATTAAACGGAGCCACTTTATACCTGCTTAAGTACTGTTTATACCACTTCTTGAATATCATTTCTTATAATAACCCCGCATTGCTAAGGGAATGATAATGACTGTGCCTTATATAAGGCCattaagagagaaaaaaagacattCCACATCTATACTTTGTAAAGACTTTACAAATgtctttttatattgttttgataTTATGGTTCTGTTTCCTCATGTGCCATGGGTACAAATGAAATCCGGAAATAAATGCGGTTTGAATATgaaa

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0090504 epiboly biological_process
GO:0001726 ruffle cellular_component
GO:0031253 cell projection membrane cellular_component
GO:0030426 growth cone cellular_component
GO:0030175 filopodium cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031009-1 Enables actin filament binding activity; protein-macromolecule adaptor activity; and signaling receptor binding activity. Acts upstream of or within several processes, including animal organ development; epiboly; and pharyngeal system development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including lamellipodium; microvillus; and ruffle. Is expressed in several structures, including head; mesoderm; nervous system; neural crest; and neural plate. Orthologous to human FSCN1 (fascin actin-bundling protein 1).

Ensembl:

ensembl_id ENSDART00000083212

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052747 lncRNA upstream 171508 40404169 ~ 40404939 (+) True XLOC_025619
TCONS_00052365 lncRNA upstream 224039 40351673 ~ 40352408 (+) True XLOC_025618
TCONS_00050451 lncRNA upstream 410245 40164136 ~ 40166202 (+) True XLOC_025611
TCONS_00050437 lncRNA upstream 944233 39626833 ~ 39632214 (+) True XLOC_025606
TCONS_00052746 lncRNA upstream 952522 39618568 ~ 39623925 (+) True XLOC_025605
TCONS_00052748 lncRNA downstream 309135 40898624 ~ 40902157 (+) False XLOC_025627
TCONS_00052749 lncRNA downstream 309735 40899224 ~ 40902157 (+) False XLOC_025627
TCONS_00052750 lncRNA downstream 309763 40899252 ~ 40902157 (+) False XLOC_025627
TCONS_00052751 lncRNA downstream 311364 40900853 ~ 40902157 (+) True XLOC_025627
TCONS_00052752 lncRNA downstream 355551 40945040 ~ 40948999 (+) True XLOC_025628
TCONS_00050459 mRNA upstream 87601 40407352 ~ 40488846 (+) False XLOC_025620
TCONS_00050460 mRNA upstream 91371 40409100 ~ 40485076 (+) True XLOC_025620
TCONS_00050457 mRNA upstream 226714 40315410 ~ 40349733 (+) False XLOC_025617
TCONS_00050458 mRNA upstream 226947 40315413 ~ 40349500 (+) True XLOC_025617
TCONS_00050456 mRNA upstream 270416 40293506 ~ 40306031 (+) True XLOC_025616
TCONS_00050462 mRNA downstream 82753 40672242 ~ 40688451 (+) True XLOC_025622
TCONS_00050469 mRNA downstream 206621 40796110 ~ 40804455 (+) True XLOC_025624
TCONS_00050470 mRNA downstream 219522 40809011 ~ 40820612 (+) False XLOC_025625
TCONS_00050471 mRNA downstream 220403 40809892 ~ 40820175 (+) True XLOC_025625
TCONS_00050472 mRNA downstream 252408 40841897 ~ 40871366 (+) False XLOC_025626
TCONS_00050449 other upstream 408066 40162399 ~ 40168381 (+) False XLOC_025611
TCONS_00050446 other upstream 691491 39884819 ~ 39884956 (+) True XLOC_025609
TCONS_00050436 other upstream 969970 39600624 ~ 39606477 (+) True XLOC_025604
TCONS_00050432 other upstream 1005592 39568488 ~ 39570855 (+) True XLOC_025602
TCONS_00050423 other upstream 1393585 39182746 ~ 39182862 (+) True XLOC_025598
TCONS_00050463 other downstream 202231 40791720 ~ 40794879 (+) False XLOC_025623
TCONS_00050464 other downstream 202257 40791746 ~ 40792877 (+) False XLOC_025623
TCONS_00050465 other downstream 202257 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050466 other downstream 202257 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050467 other downstream 202257 40791746 ~ 40794840 (+) False XLOC_025623

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_03761959_03768003.mRNA True 3097 mRNA 0.47 5 CI01000046 3760451 ~ 3768116 (-)
bowfin (Amia calva) AMCG00018526 True 1392 mRNA 0.54 5 CM030135.1 13639723 ~ 13649092 (+)