LOC118965487


Basic Information

Item Value
gene id LOC118965487
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 6759400 ~ 6761807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965487
CTGGAGTGTCAAAGTCACTCGGGTTTTTTAGCAGGGAGTTCACAGTCAGCTCCGCTAAAGTCTCCATAGGCAGAATGATGGCGTACACTTgtgctgtctgtctatctgcctacACATATTCTGATTTACTGAGAACACAGCCGTTCTCTCCAGTGTCCAAATCATCTTCCTGGTCGGTATGATGGTTCACATCCACTTTGTGAAGGTGGACCATGTGAGACTCATCGTTGGTTCCCTGGGTAACCAGGTGTCTTCTAGCCACGCCTCCTGCACGGAGTCCTACAGACTTCATAGAGATGGGCAAGATCAAAGACATAGTAAATTAAAATGAAGCTATTGTGAAGTTCTgtgttatatactttctctgtttGAAAATCAAAGACATAGTAAATAATGAAGCTATTCACATGTCAACAACGTCTTTCAGAGAGTCAAAGACAAGACTGAGCTGCCTTGTCAAAGTGTATAAAGAGCAGCCAGGAGATTCTAGCAAAGTGCTGA
>TU762001
CTCAATGTTTGTAGTTTGTTAGCTGGCTAGAACACAGCCGTTCTCTCCAGTGTCCAAATCATCTTCCTGGTCGGTATGATGGTTCACATCCACTTTGTGAAGGTGGACCATGTGAGACTCATCGTTGGTTCCCTGGGTAACCAGGTGTCTTCTAGCCACGCCTCCTGCACGGAGTCCTACAGACTTCATAGAGATGGGCAAGATCAAAGACATAGTAAATTAAAATGAAGCTATTGTGAAGTTCTgtgttatatactgtagtagCCCTTACCGTATCATATGTGATGGAATATGatttgctgttggcttgtgtgggtatatgtgttatgcaacatagctgacttgagacATTGTTAAGGCTTTTCtcgtgatggaaaaatacagaataacatgaagacaggaactgtTCAATGAGTTGtgggggggcacattcagaacgtagtgttgcgagaacaaacggtcttttgttagataacaggagccaggtgtgtGATAACTGTATTGAGTGTGTGAGCGCATAGATATTCTACACAactacaacgactgaccgctgaagcgccAAGGAGGCTGGGACCAGCTCgggcgccaacaatcaacgataggctgagtgagtttaaaccacgcccagtctctactctgacaggccggctcggaagcaagAACTAATTCTGTCAAGAGTatattataatatctttgtcaggaacaagtcagttctctgtttgccctgcgaggtgtgacagagagcccgtatatactgaaattgcatttaccacttattgcttag
>TU762005
CTCAATGTTTGTAGTTTGTTAGCTGGCTAGAACACAGCCGTTCTCTCCAGTGTCCAAATCATCTTCCTGGTCGGTATGATGGTTCACATCCACTTTGTGAAGGTGGACCATGTGAGACTCATCGTTGGTTCCCTGGGTAACCAGGTGTCTTCTAGCCACGCCTCCTGCACGGAGTCCTACAGACTTCATAGAGATGGGCAAGATCAAAGACATAGTAAATTAAAATGAAGCTATTGTGAAGTTCTgtgttatatactgtagtagCCCTTACCGTATCATATGTGATGGAATATGatttgctgttggcttgtgtgggtatatgtgttatgcaacatagctgacttgagacATTGTTAAGGCTTTTCtcgtgatggaaaaatacagaataacatgaagacaggaactgtTCAATGAGTTGtgggggggcacattcagaacgtagtgttgcgagaacaaacggtcttttgttagata
>TU762006
ctagtaatgTTATCTCACTGCTATCTGAAGACGTTACAGCTAGCCTACAGTAGTTTGGAAATGGCTAGATATCGCTCCAGCCGTAATTGATCTCTCTGGAGTGTCAAAGTCACTCGGGTTTTTTAGCAGGGAGTTCACAGTCAGCTCCGCTAAAGTCTCCATAGGCAGAATGATGGCGTACACTTgtgctgtctgtctatctgcctacACATATTCTGATTTACTGAGAACACAGCCGTTCTCTCCAGTGTCCAAATCATCTTCCTGGTCGGTATGATGGTTCACATCCACTTTGTGAAGGTGGACCATGTGAGACTCATCGTTGGTTCCCTGGGTAACCAGGTGTCTTCTAGCCACGCCTCCTGCACGGAGTCCTACAGACTTCATAGAGATGGGCAAGATCAAAGACATAGTAAATTAAAATGAAGCTATTGTGAAGTTCTgtgttatatactgtagtagCCCTTACCGTATCATATGTGATGGAATATGatttgctgttggcttgtgtgggtatatgtgttatgcaacatagctgacttgagacATTGTTAAGGCTTTTCtcgtgatggaaaaatacagaataacatgaagacaggaactgtTCAATGAGTTGtgggggggcacattcagaacgtagtgttgcgagaacaaacggtcttttgttagata

Function

NR:

description
PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit H-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965487 False 501 mRNA 0.43 5 6759400 6761544
TU762001 False 784 lncRNA 0.45 2 6760203 6761807
TU762005 False 474 lncRNA 0.43 2 6760513 6761807
TU762006 True 672 lncRNA 0.44 2 6760513 6761639

Neighbor

gene id symbol gene type direction distance location
LOC110529288 LOC106571062 coding downstream 41617 6695982 ~ 6717783 (-)
LOC110529295 LOC106571079 coding downstream 714474 5938942 ~ 6044926 (-)
LOC110529170 LOC106571034 coding downstream 1019829 5649496 ~ 5739571 (-)
LOC118965593 NA coding downstream 1048279 5710145 ~ 5711121 (-)
si:dkey-229d11.5 NA coding downstream 1172765 5583845 ~ 5586635 (-)
wdr21 dcaf4 coding upstream 24833 6786377 ~ 6801903 (-)
LOC110529169 LOC106571069 coding upstream 94347 6855891 ~ 6966251 (-)
sipa1l1 LOC106571085 coding upstream 238741 7000285 ~ 7234525 (-)
LOC110529175 LOC106571087 coding upstream 495373 7256917 ~ 7287390 (-)
LOC110529304 LOC106608157 coding upstream 579155 7340699 ~ 7369522 (-)
G668978 NA non-coding downstream 94220 6664825 ~ 6665180 (-)
G668975 NA non-coding downstream 107814 6650221 ~ 6651586 (-)
G668969 NA non-coding downstream 125790 6633407 ~ 6633610 (-)
G668968 NA non-coding downstream 126024 6633122 ~ 6633376 (-)
G668503 NA non-coding downstream 138273 6620800 ~ 6621127 (-)
G669018 NA non-coding upstream 26538 6788082 ~ 6788631 (-)
G669045 NA non-coding upstream 75534 6837078 ~ 6837573 (-)
G669046 NA non-coding upstream 76753 6838297 ~ 6838769 (-)
G669049 NA non-coding upstream 80895 6842439 ~ 6843089 (-)
G669052 NA non-coding upstream 88393 6849937 ~ 6851318 (-)
G668192 NA other downstream 475379 6206558 ~ 6284021 (-)
G668238 NA other downstream 477760 6280196 ~ 6281640 (-)
znf395b LOC106571047 other downstream 1208155 5535756 ~ 5551550 (-)
G667122 NA other downstream 2269180 4488806 ~ 4490220 (-)
G665927 NA other downstream 3089253 3668232 ~ 3670147 (-)
G669087 NA other upstream 228306 6989850 ~ 6991612 (-)
G669278 NA other upstream 555760 7317304 ~ 7320203 (-)
G669229 NA other upstream 564006 7325550 ~ 7334714 (-)
LOC110529302 LOC106571090 other upstream 639920 7400907 ~ 7423688 (-)

Expression


Co-expression Network