LOC110529676 (LOC106571466)


Basic Information

Item Value
gene id LOC110529676
gene name LOC106571466
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25323627 ~ 25326298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612107.2
GACTTGCTAATAGGTTCTAGTTATACACGTGCCGCGTTTAACCAGTTAGAAAGTCGGATATATTTGAGTTTTCTAGTTCCCGACTATCACTTGAACGCTGCAATAGTTCTAAAACACCCTTACTTCCTGATAGCGGTTTACTGACACATGACACTCTGTTGGTGATACCACCGAACGCTAAACTTCTAAACTGCAATAGCAACAGATTATATCAACCGAACTGACAGATATTTGTGGCAGCAAAAGGAGTCATCATCAATAGACTTTTATATATTTCTTCGCGTGCCAGTTTGCAACGTTCTGCGGAAACCGCTGCCTCTTGGCTGTGGGTTCTATCGAAAGTTACAATGTTGCAACTGCAAGTAGGATGAAACACACGATGTGAACGCTTTCAATAGTCAGGTGATTTCAAGTCATTGTTATTGTATTCAAAGTTAGCCTTTACCGTTACGAAAATGAGGTTACGATTCTTTAAAAAGAACCTGCTCATTCTCATGGGTGTTTCTTTAATTATTGCCACTGTCATGATCATAACACGTGTATTAATTTATGATGAAGTCACGGGTGTTGTCGCTCAGGAAAACATGTTGTCTGGTGACATGGCGAAGTTTCAGTATGGTTCTGTTCCTGTATTGATGAAGTCTGTTTACAATGCCAATTATCACCAATACGTTCAGAATGCAGACACGTATCCTGGGGAGCCTAAACTGGTCCTGGTTATTCAGGTTCACAACAGACCAGACTACCTCAAAATACTTATCAAGTCATTGGAAAATGCAGCTGAGGTCCACAACTTTTTGCTGATTTTCAGCCATGACTATTTTTCAGAGGAAAACAATGACATAGTGCAAGGGATAACTTTCTGCAAGGTTGTACAAATATACTTCCCCTACAGCACACAGCTCTATCCCAGTGAGTTTCCTGGGCAGGATCCACGGGACTGTCCACGAGACATATCCAAGGATGATGCTTTAAAAACAGGATGCCTCAACGCTGAGCATCCAGATTCGTATGGCCACTATAGGGAAGCCTCCATCACACAGACCAAACACCACTGGTGGTGGAAACTTCACTTTGTGTGGGAGCGAGTGCAGGCTCTTCATGGTTACAGTGGCTTTGCAGTTTTCCTCGAGGAGGACAACTACATCTTGCCCGACCTCTACCACCTTTACAACGAGATGGTTGGATACAGGAAGAGCAGCTGTCCTGACTGTGACATGCTGGCGCTAGGCAACCACAACGGCCTGGCAGAGTTTGATAAGCTCAGCAACAAGGTGCAGACTGCCGGGTGGATGTCTACTAAGCACAACATTGGCATGGGCATTTCCAGAGAGGTGTACTACAAGCTGATGGGTTGCAATGATGACTTCTGCACCTATGATGACTACAACTGGGACTGGACCCTCCAGCACCTGTCAGGGACTTGCATCTCCAAGCCACTCAAAGTGCTGGTGGCCCAGGGATCCAGGGTTCTCCATACTGGGAACTGTGGGCTGCACCAGAACAAGGAGGCCTGTCTGCCTGAGCTGGCCCTACAGAAAGCACAGGAGTCTCTTAAGCTTGCCaaagtctccctctaccctcagTCCCTGGCCCTAACAAACACAGAGTCAATGGAGCACAAGGCTCACATGAAAAACGGCGGGTGGGGTGATATCCGTGACCATGTTCTTTGTAATAACTATGCTAAACGTCTATGAACTAAGGGTTTCTCACTTTCATCTTTTTGATGTACTGAGGATTGAGGAAATAAGTGCCATTCATACATTGAGTTCCAAAGACCGCAGTGTGTTTTACTTGTGGTTTTTAATGAGGTCTTCCAAGGGTTAGTGAACATTTGATTAGGAATGTTTTGGTGTGTATGCAGCAGTGTGATTTATAGCTTGGTTGTTATTACCGAAAGTACCATGATTGCCaaatatatttctttattttttttaacagatTATGCAAGCCTATTCTTATGGACTGTAACATCGTTTGCTTTATATTTTCTAAAAATGAAGACCACATTTTTGTTGAAGTAAAATGACTGTGTTAGACTTCATGAAAAGAACATAATGTTTCAACGCCAGCAGCTAATTATTATGGTACACATAAATGACTTCATATTGAAAACGAAACTAAATCCGAGTAATACATTCTTGGTTTCGACTACATGTTAGATCATTGCCATTTGTATACATCCTTCAGAACAAATAAGAGAGTTGAGCCATTTTCCCATTTAATGTGGTGACGCTTATCCAACTTCAGGATCTCTTACCCATTCACACAAAATCTAGAATCTAATATTTTTCCTTTAATTTATATGTGGTGCATACGGTACAAATAGAAAAATAGCAGCAAAAGTCATTGTTCGGTATATAATGAACAAACCTATCGGTTCTATTGTACAATAAAAGTGACAATCTTGAAATGACTGGTTTATTGACAAATATATTAAACTATGTTCACTTTTATCTGACAATTGCTTTTACTTGTACAATACTTACTGTACAAAGCCTACAGTATGTAATTTGTTTGACAAATGTGTGAGTACAataaaacaacatgttttacatggGAACAACAGGAA

Function

NR:

description
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612107.2 True 2575 mRNA 0.41 2 25323627 25326298

Neighbor

gene id symbol gene type direction distance location
LOC110529677 brox coding downstream 2815 25310439 ~ 25320812 (-)
LOC110529678 LOC106571467 coding downstream 13844 25307431 ~ 25309783 (-)
LOC118965601 NA coding downstream 17714 25304419 ~ 25305913 (-)
LOC110529673 LOC106571464 coding downstream 19570 25296400 ~ 25304057 (-)
LOC110529672 LOC106571463 coding downstream 29247 25290209 ~ 25294380 (-)
LOC110529680 disp1 coding upstream 89979 25416277 ~ 25490274 (-)
LOC110529682 LOC106571470 coding upstream 171275 25497573 ~ 25503435 (-)
LOC110529692 LOC106607895 coding upstream 417726 25744024 ~ 25758350 (-)
LOC110529693 LOC106571480 coding upstream 432579 25758877 ~ 25775028 (-)
LOC110529218 NA coding upstream 470602 25796900 ~ 25800394 (-)
G689620 NA non-coding downstream 6030 25252752 ~ 25317597 (-)
G689644 NA non-coding downstream 17205 25305639 ~ 25306422 (-)
G689606 NA non-coding downstream 87384 25233139 ~ 25236243 (-)
G689593 LOC106571458 non-coding downstream 102327 25217015 ~ 25221300 (-)
G689079 NA non-coding downstream 264941 25057588 ~ 25058686 (-)
G689659 NA non-coding upstream 18580 25344878 ~ 25345222 (-)
G689677 NA non-coding upstream 72977 25399275 ~ 25399585 (-)
G689680 NA non-coding upstream 81499 25407797 ~ 25408072 (-)
G689681 NA non-coding upstream 82374 25408672 ~ 25408969 (-)
G689683 NA non-coding upstream 83431 25409729 ~ 25409976 (-)
LOC110529665 LOC106571552 other downstream 325792 24992535 ~ 25010299 (-)
G688922 NA other downstream 586587 24736046 ~ 24737040 (-)
G688537 NA other downstream 642201 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 692578 24629554 ~ 24631049 (-)
LOC110529658 LOC106571450 other downstream 883427 24438965 ~ 24446940 (-)
G689656 tlr5m other upstream 49824 25376122 ~ 25407347 (-)
G689685 NA other upstream 84525 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 191268 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 337867 25664165 ~ 25664665 (-)
LOC110529694 LOC106571481 other upstream 475666 25801320 ~ 25805570 (-)

Expression


Co-expression Network