LOC110529696 (LOC106571482)


Basic Information

Item Value
gene id LOC110529696
gene name LOC106571482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25854580 ~ 25873677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985176.1
ttaatgttagagttaaggttagtattaggtttaaaatcacattttaagaagaagAATTGTACAAATGGGCGGGGTTTAGCCTATGTCTTTGTGGGTATAGAAGCTAGAGACGACCATCCCTCCTTGTCTCACGACAATTCGACAGTGTTGCCGCACAAGAGACCGAAACCGGAGGAGATGTTATAGACCTCCGAAAATATTTTACGGTGATGCGTTAACGTTTTCAAGAGGATATAAGAGAGCTGGGATCAAGCAAACCGGGAACGAGCAGGAAGCGAAAATAAACGGCAGTTTCTGTCACGGTTGGAAGTTTTGACGGATTTCAAAACAGTGGATTATGTGAATGTGATTGTAAACACTGGTCTGGGGTTGACACGAATGTAGGCTAATTGCGTAGGACTGAAAGTTTCTGTAGGCTAATAAATAGCatttttccttttttccaatgGACTCGCATTTGGAGACTGCTTGCACACAAAGTATGGAATTACCCCTGTAATGTGGATTGCAATTTCATTTGAAGAAAATAAAGGTCTACTCCAGAACAATGTGAAAAGATACGCGTCCTGGATTCTAATGTTTCTGGATATCTTGAAAATTATTGGCAACAGTTGAAATTATGCTCAACCGATTTTTGCTCAGGTGTCTTGCCTGCTCCGACCGTGGGACCAAAATGGATTTGACGCCACTACAGACCCCGGTCCCCCTTTTACAGAAGTTCTAACAGTTATTACACTTTGCTTTACTGTTTTAAACTTTACAAATGCTTTGGAAGAAATCGCCAGACGACCCGCTTGGATTTTAAATCTACATTTGCATTTGGAATTTCAATCATGAACTTTGACAGTTTGATAACATTATTTCTCCTGACACTTCTGTATTTGTCAGCTGTCAAGAGTGCCCACATACctaaggaaggagggagaagtgCGCATGACGGCGTGATCTCCTTCATGGAGGTGTACAATAAGAGCCTGTGTCAGCCCAGGGAGCTGCTGGTAGAGATCCTACAGGAGTACCCAGAGGAGGTAGAACACATCTTCATCCCATCCTGTGTGGTGCTGACACGCTGTGCAGGCTGCTGCAACGACGAGATGCTACAATGTACGCCAACCTCCACGCATAACGTCACCATGGAGATAAAAAGAATAAAACCCCACAAGCAACAAAATGATATCTTCATGAGTTTTACAGAACACAATGCATGTGAATGCAGGCCAAAGAATGAAGTGAAAGAACAGAAAGAAAAtcaGTGCGAGCCATGTTGTGATGGCTGCTTAGCGAGGAGAAAGCGGTTGTTCATCCAGAACCCTCTGACCTGCCAGTGTTCCTGCAGAAACTCTGACGCCGACTGCAGGGCACGTCAGCTGGAGCTCAACGAGAGGTCCTgcagATGTGACAAGCCCAGGAGATGAGTCTAAGCTTAAGATGAAACAACGTGAAGGGACATTCACAAGATATTTCATAGCACTTTCAACTCTGAGCTTATCTTCTTTGTGGAAAGCATTCCCCTGGACTGACTGAGAAACAGCagtgagaaaagagagggggagagataaagaaataatacattaatagAAAAATAATCCCAATGTATCTGCATatactaagagagagagaaagaaaaagtacAGAATTTGTATTGCTGCTAAAAGAGCTAACTAAAACCCATCGTTTGGCGTTTGACTGGACTACGGTTTTGTTGTTGATTCATTTATGCAAATACTTCACTGGATATGTGTGAGTACTGTGGTTATGTGTTAAATCATGAGGAACAAAACTTTGCTATGTGGTAGGTATATCcacagaagagaagaggaagaggaaggaagaaCATTCTTCCTGACCCATAGACTCCCTTTGCAGGAGCCCAATGGCAATGGCAGGACAGCCAATGGGAGATGGGGATCCGTCCCTTTATGACAGCACTTCCTTTTCCTTAAAGGAAGTTCTAGAACTGATGCGTGGAACGTGTGGAAAGCTAGAACTGTGCATTTTGCTGGCCTAGCTAGCAGCGGAACTGGATTTGGAGTGCCATAATACCCAAAGGGATGCTGATGATTGATTTTGGTATACATGGAAACCACTAGAAACAACTGATACTGTAGCTTGATTCCATTGAGAAACTGCCTCACAAACTGTGCTAATCACTTTAGAGTGAGAAATCCTGAATTAGCTTCTTaaattatttttgtttattttgaggggaggggagggggatgttaTGCTGTCTGTGGTTGAACTCAATACAGAATGCAATAGTATCGATGGCAAGCAGTCTGTATATACTATACATACTTAATATCCCTTATGTCATAGTCCACTATAGATAATTTATAATGTTAGAGTATTTTCAGTATTCAGTCCTCTACCCATATTTAATTTGATCTATTTATATATCAAGTGTTATGTTCCTTTGGGTTTCCCCCCTTCCTGCTATGTGATGCCATTGTGGTCTCCATTCTGCCTAGCTACAAGGAGATACTGCTCTAGGCTTTTATAAGAAAAAGAAAAACCTTTACGTTAACATTCCTGAAATGGATCATTTGTATGGACGCCATCTATTCTGGATTTATCAACCCTTTTTTATAGAGGGTGGAGGTTCTGCGTGTGATTTTTAACCTGCTCTATGGtcttggcgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagagaggcagaggaggctTATGCTTGTCTTGAGCTCCATCACGCAGATAACAATAAACCATTGCTAAAAGAAAGCTTGGCCTACCAAGTCAACTGTTTGTATTAAAGCTAGCAATCTGCAATATCAAGAATATATGATTTCATGATAATAGTACTTGTGGTTTCTTTTCCAAtattaacatgtttttttctgtGACAGTGAAAAGTAGTAAAGcatatttatttacaaatta
>XM_036985175.1
ggcacAAGGTGAgcagtgtggttaatgttagagttaaggttagtattaggtttaaaatcacattttaagaagaagAATTGTACAAATGGGCGGGGTTTAGCCTATGTCTTTGTGGGTATAGAAGCTAGAGACGACCATCCCTCCTTGTCTCACGACAATTCGACAGTGTTGCCGCACAAGAGACCGAAACCGGAGGAGATGTTATAGACCTCCGAAAATATTTTACGGTGATGCGTTAACGTTTTCAAGAGGATATAAGAGAGCTGGGATCAAGCAAACCGGGAACGAGCAGGAAGCGAAAATAAACGGCAGTTTCTGTCACGGTTGGAAGTTTTGACGGATTTCAAAACAGTGGATTATGTGAATGTGATTGTAAACACTGGTCTGGGGTTGACACGAATGTAGGCTAATTGCGTAGGACTGAAAGTTTCTGTAGGCTAATAAATAGCatttttccttttttccaatgGACTCGCATTTGGAGACTGCTTGCACACAAAGTATGGAATTACCCCTGTAATGTGGATTGCAATTTCATTTGAAGAAAATAAAGGTCTACTCCAGAACAATGTGAAAAGATACGCGTCCTGGATTCTAATGTTTCTGGATATCTTGAAAATTATTGGCAACAGTTGAAATTATGCTCAACCGATTTTTGCTCAGGTGTCTTGCCTGCTCCGACCGTGGGACCAAAATGGATTTGACGCCACTACAGACCCCGGTCCCCCTTTTACAGAAGTTCTAACAGTTATTACACTTTGCTTTACTGTTTTAAACTTTACAAATGCTTTGGAAGAAATCGCCAGACGACCCGCTTGGATTTTAAATCTACATTTGCATTTGGAATTTCAATCATGAACTTTGACAGTTTGATAACATTATTTCTCCTGACACTTCTGTATTTGTCAGCTGTCAAGAGTGCCCACATACctaaggaaggagggagaagtgCGCATGACGGCGTGATCTCCTTCATGGAGGTGTACAATAAGAGCCTGTGTCAGCCCAGGGAGCTGCTGGTAGAGATCCTACAGGAGTACCCAGAGGAGGTAGAACACATCTTCATCCCATCCTGTGTGGTGCTGACACGCTGTGCAGGCTGCTGCAACGACGAGATGCTACAATGTACGCCAACCTCCACGCATAACGTCACCATGGAGATAAAAAGAATAAAACCCCACAAGCAACAAAATGATATCTTCATGAGTTTTACAGAACACAATGCATGTGAATGCAGGCCAAAGAATGAAGTGAAAGAACAGAAAGAAAAAGAACCCTGGAAAGGCAAGGGCAAAGGCCAAAAGAGAAAGCGAAAGAAAAAGCGTGACAAAAAGAATCGCCACTCtcaGTGCGAGCCATGTTGTGATGGCTGCTTAGCGAGGAGAAAGCGGTTGTTCATCCAGAACCCTCTGACCTGCCAGTGTTCCTGCAGAAACTCTGACGCCGACTGCAGGGCACGTCAGCTGGAGCTCAACGAGAGGTCCTgcagATGTGACAAGCCCAGGAGATGAGTCTAAGCTTAAGATGAAACAACGTGAAGGGACATTCACAAGATATTTCATAGCACTTTCAACTCTGAGCTTATCTTCTTTGTGGAAAGCATTCCCCTGGACTGACTGAGAAACAGCagtgagaaaagagagggggagagataaagaaataatacattaatagAAAAATAATCCCAATGTATCTGCATatactaagagagagagaaagaaaaagtacAGAATTTGTATTGCTGCTAAAAGAGCTAACTAAAACCCATCGTTTGGCGTTTGACTGGACTACGGTTTTGTTGTTGATTCATTTATGCAAATACTTCACTGGATATGTGTGAGTACTGTGGTTATGTGTTAAATCATGAGGAACAAAACTTTGCTATGTGGTAGGTATATCcacagaagagaagaggaagaggaaggaagaaCATTCTTCCTGACCCATAGACTCCCTTTGCAGGAGCCCAATGGCAATGGCAGGACAGCCAATGGGAGATGGGGATCCGTCCCTTTATGACAGCACTTCCTTTTCCTTAAAGGAAGTTCTAGAACTGATGCGTGGAACGTGTGGAAAGCTAGAACTGTGCATTTTGCTGGCCTAGCTAGCAGCGGAACTGGATTTGGAGTGCCATAATACCCAAAGGGATGCTGATGATTGATTTTGGTATACATGGAAACCACTAGAAACAACTGATACTGTAGCTTGATTCCATTGAGAAACTGCCTCACAAACTGTGCTAATCACTTTAGAGTGAGAAATCCTGAATTAGCTTCTTaaattatttttgtttattttgaggggaggggagggggatgttaTGCTGTCTGTGGTTGAACTCAATACAGAATGCAATAGTATCGATGGCAAGCAGTCTGTATATACTATACATACTTAATATCCCTTATGTCATAGTCCACTATAGATAATTTATAATGTTAGAGTATTTTCAGTATTCAGTCCTCTACCCATATTTAATTTGATCTATTTATATATCAAGTGTTATGTTCCTTTGGGTTTCCCCCCTTCCTGCTATGTGATGCCATTGTGGTCTCCATTCTGCCTAGCTACAAGGAGATACTGCTCTAGGCTTTTATAAGAAAAAGAAAAACCTTTACGTTAACATTCCTGAAATGGATCATTTGTATGGACGCCATCTATTCTGGATTTATCAACCCTTTTTTATAGAGGGTGGAGGTTCTGCGTGTGATTTTTAACCTGCTCTATGGtcttggcgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagagaggcagaggaggctTATGCTTGTCTTGAGCTCCATCACGCAGATAACAATAAACCATTGCTAAAAGAAAGCTTGGCCTACCAAGTCAACTGTTTGTATTAAAGCTAGCAATCTGCAATATCAAGAATATATGATTTCATGATAATAGTACTTGTGGTTTCTTTTCCAAtattaacatgtttttttctgtGACAGTGAAAAGTAGTAAAGcatatttatttacaaatta

Function

NR:

description
vascular endothelial growth factor A-A-like

GO: NA

KEGG:

id description
K05448 VEGFA; vascular endothelial growth factor A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985176.1 False 2931 mRNA 0.41 7 25854580 25873656
XM_036985175.1 True 3027 mRNA 0.42 8 25854580 25873677

Neighbor

gene id symbol gene type direction distance location
LOC110529694 LOC106571481 coding downstream 49010 25801320 ~ 25805570 (-)
LOC110529218 NA coding downstream 54186 25796900 ~ 25800394 (-)
LOC110529693 LOC106571480 coding downstream 79552 25758877 ~ 25775028 (-)
LOC110529692 LOC106607895 coding downstream 96230 25744024 ~ 25758350 (-)
LOC110529682 LOC106571470 coding downstream 351145 25497573 ~ 25503435 (-)
LOC110529697 NA coding upstream 118747 25992424 ~ 25998685 (-)
LOC110529219 NA coding upstream 133205 26006882 ~ 26017782 (-)
LOC110529220 LOC106571486 coding upstream 213769 26087446 ~ 26094609 (-)
LOC110529700 LOC106571487 coding upstream 221264 26094941 ~ 26106801 (-)
LOC110531082 pgm3 coding upstream 246788 26120465 ~ 26122280 (-)
G689895 NA non-coding downstream 43183 25811055 ~ 25811397 (-)
G689883 NA non-coding downstream 75218 25779126 ~ 25779362 (-)
G689874 NA non-coding downstream 116879 25737493 ~ 25737701 (-)
G689873 NA non-coding downstream 117158 25737222 ~ 25737422 (-)
G689870 NA non-coding downstream 118650 25735460 ~ 25735930 (-)
G689966 NA non-coding upstream 34315 25907992 ~ 25908308 (-)
G689981 NA non-coding upstream 47147 25920824 ~ 25921483 (-)
G690009 NA non-coding upstream 70059 25943736 ~ 25943945 (-)
G690021 NA non-coding upstream 82086 25955763 ~ 25956270 (-)
G690047 NA non-coding upstream 99862 25973539 ~ 25973784 (-)
G689810 LOC106571475 other downstream 189915 25664165 ~ 25664665 (-)
G689723 rad51 other downstream 333292 25517566 ~ 25521288 (-)
G689685 NA other downstream 443448 25410823 ~ 25411132 (-)
G689656 tlr5m other downstream 447233 25376122 ~ 25407347 (-)
G690033 NA other upstream 91502 25965179 ~ 25965493 (-)
G690073 NA other upstream 117001 25990678 ~ 25991143 (-)
cenpw LOC106571497 other upstream 555438 26428702 ~ 26430888 (-)
G691447 LOC106571509 other upstream 990533 26864210 ~ 26868078 (-)
G691747 NA other upstream 1441891 27315568 ~ 27315935 (-)

Expression


Co-expression Network