ubr7 (ubr7)


Basic Information

Item Value
gene id ubr7
gene name ubr7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28606271 ~ 28624188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985232.1
TTCCATCTGGGCCCGTGTATAATAACTCCCTCAGTGTATCGGGTTTGAGAATAACATAACGTCCAGTGCGCTCCAATATTTTTTTGCTTATTATATCTAATTTATTGTATCTTTTGGTGAACAGAGCATTTTGATACATCTTCCTTAGTCATGGACGTCCCTGTTTAGATTTATCTGGCGCTCTACATTTTGCCCTGGAACAGGAACTTGTATTCACACTTTTTCACCTTCTATTTTCCAAGAATGGCGGCAAATGAGGGAGATGAGGCTACTGTTTCTTTGGTAGATGTTTTGGAAGAAGATGAAGAGTTGGAGAATGAGGCATCTGCTGTTTTAGCTGGTAGTGATTCTGAGAAGTGTTCCTATCCCGAGGGCTATGTGAAGCGTCAAGCCCTCTATGCCTGCAGCACCTGCACACCAAAGGGGGGCCAGCCAGCCGGAGTCTGCCTGGCCTGCTCCTACAAATGCCATGAAGGCCATGACCTTTTTGAGCTCTACACCAAAAGGAATTTCCGCTGTGACTGTGGAAACGGCAAGTTTGAAGAGATGAGGTGCAAGTTATATTCAGACAAGGATCAGTTGAACACGGAGAACAAATACAGCCACAATTTTGTTGGTCTGTATTGCACCTGTAACCGGCCATATCCAGACCCAGAAGACCCGGTTGAAGATGAGATGATACAGTGCATTGTCTGTGAGGACTGGCTTCATGGCAGGCACTTGGGTTGCCCTGTGCCAGAGTGTGTGGAGCTCCAGGAGATGGTGTGTGAGTCCTGCATGAACAATGCTCCTTTCCTGTGGGCCTACGCCACCCATCTGGCAGTGCCCGCTGAGACCAAAGCCAGCCCCTGCAAAGCAGAAGGGGAGGTGACGAATGAAGAGGGGGACCGTGAGGAGGGCAAGAACACAACAGAGGAGGCCTCCACGAGCCTCAATAACCAGGGTGAAGAGAAGGTCAAATCCAATGGGGTGCCAGGCTGCAAAAGGAGGCaccaggagatggagggaggctcGCCCTCCAAAGCCCCCTCCGAGTGCAGGCTCATGGAGCTGGGGGGCACAGGTACAGAGAGAGCAGAGTTTGGAGCTGTATTCTGGCCCTCAGCCTGGAGAACCAAACTCTGTTCCTGTGTCAGCTGCAAGAAATCCTACGCTGAAGCTGGTATGTCCTTTCTCCTGGATGAGTCGGACACGGTCTTAGCCTACGAGAATAAAGGAAAGACCACAGAACAGGAGCAGGCGGGGACCGCCGAGGGTCGCGACCCCCTGATGTCGGCCCTTAATACCCTGGGCCGGGTTCAGCAGCTGGAGATAATCCACGGGTACAATGACATGAAGACTGAGCTGAAGGATTTCCTGCAGAGATTTGCTGCAGAAGGAAAGGTAGTGACTCCCGAAGACATCCGTCAGTTCTTCCAACAGCAGCAGAACCGCAAGAGACGACGGGCCAACGCGGGCCAGTACTACTGCAGCTGAGCAGTCTCCATTCAGACAACTCCCGGTCTCCCCCATCTCCACAACACCTGTCAGTATAGTTGTATTCCTTTTTCTTCTTCCCACTGAATGTCATTGCCTTGCGTCCAATATCATCTTCTAGTACAACTCCTCAGATGTTAtgtttaaacaaataaaaatgcagtaaaaaaaaaaaaaaagaaggtctATTGAACATTGTATGAGCTTTTGTGTTATCTTGTTCTGGGCAGTATGCTTTGTTGTACTGTACTCGGGACTCTGCAATGTGATTTGTCTATTGGGGCTAAGCAGGTTAATGAACTGGCATTTGGTTGATGTGGATGATACTTTGGTTATCTTTTTGTAGAGGGAATTATTAGTCTATCATTGCTCTCCCTCAAACACTTTTTGTTTAAACTGGAGAGAAAGCCTAAGTTCAGTTTGCCTGACAGAAAGTGTTCCAGACAACAGACAGAGCAGTGgaccccttgaccttttattTACCTTTTTATTTGAATAAACATCAATGGATTTGCTCTTAAAACTCATTAGAACAATGCATTATCAAAACTGGTTAAGCTGGTCATCGTTCCCATAACACGCTTTCTCTCAACTCATTCCTCTGACAATTTATAATTTTGTATTTGTCCTTAGTTGCAATTTCCTTAGTGCCGTTACAGCTGTTTGTAGATCGCATGATTGCAGAACCCTGGCCCATTAGTACGGTTGGTATTTTAAAGGACCACGTTAAATGTTACCATTGGTTTCCCTGTTCCTTTTTAATGTTCACTCTAAGAAATAAAGCTATGAATAATGTA
>XM_021612215.2
TTTGTAGCCgagcaagctaacgttagtcgGTTTGATACTGGGAAGATCTGTGTTATGAAGTAGCTAGCCCCAAAGACAGTTATctaaatgaattctctgatcaACGTGGGCGGTTTATCTGATCATCCAAAGATTTGCTAAGAATGGCGGCAAATGAGGGAGATGAGGCTACTGTTTCTTTGGTAGATGTTTTGGAAGAAGATGAAGAGTTGGAGAATGAGGCATCTGCTGTTTTAGCTGGTAGTGATTCTGAGAAGTGTTCCTATCCCGAGGGCTATGTGAAGCGTCAAGCCCTCTATGCCTGCAGCACCTGCACACCAAAGGGGGGCCAGCCAGCCGGAGTCTGCCTGGCCTGCTCCTACAAATGCCATGAAGGCCATGACCTTTTTGAGCTCTACACCAAAAGGAATTTCCGCTGTGACTGTGGAAACGGCAAGTTTGAAGAGATGAGGTGCAAGTTATATTCAGACAAGGATCAGTTGAACACGGAGAACAAATACAGCCACAATTTTGTTGGTCTGTATTGCACCTGTAACCGGCCATATCCAGACCCAGAAGACCCGGTTGAAGATGAGATGATACAGTGCATTGTCTGTGAGGACTGGCTTCATGGCAGGCACTTGGGTTGCCCTGTGCCAGAGTGTGTGGAGCTCCAGGAGATGGTGTGTGAGTCCTGCATGAACAATGCTCCTTTCCTGTGGGCCTACGCCACCCATCTGGCAGTGCCCGCTGAGACCAAAGCCAGCCCCTGCAAAGCAGAAGGGGAGGTGACGAATGAAGAGGGGGACCGTGAGGAGGGCAAGAACACAACAGAGGAGGCCTCCACGAGCCTCAATAACCAGGGTGAAGAGAAGGTCAAATCCAATGGGGTGCCAGGCTGCAAAAGGAGGCaccaggagatggagggaggctcGCCCTCCAAAGCCCCCTCCGAGTGCAGGCTCATGGAGCTGGGGGGCACAGGTACAGAGAGAGCAGAGTTTGGAGCTGTATTCTGGCCCTCAGCCTGGAGAACCAAACTCTGTTCCTGTGTCAGCTGCAAGCAGAAATCCTACGCTGAAGCTGGTATGTCCTTTCTCCTGGATGAGTCGGACACGGTCTTAGCCTACGAGAATAAAGGAAAGACCACAGAACAGGAGCAGGCGGGGACCGCCGAGGGTCGCGACCCCCTGATGTCGGCCCTTAATACCCTGGGCCGGGTTCAGCAGCTGGAGATAATCCACGGGTACAATGACATGAAGACTGAGCTGAAGGATTTCCTGCAGAGATTTGCTGCAGAAGGAAAGGTAGTGACTCCCGAAGACATCCGTCAGTTCTTCCAACAGCAGCAGAACCGCAAGAGACGACGGGCCAACGCGGGCCAGTACTACTGCAGCTGAGCAGTCTCCATTCAGACAACTCCCGGTCTCCCCCATCTCCACAACACCTGTCAGTATAGTTGTATTCCTTTTTCTTCTTCCCACTGAATGTCATTGCCTTGCGTCCAATATCATCTTCTAGTACAACTCCTCAGATGTTAtgtttaaacaaataaaaatgcagtaaaaaaaaaaaaaaagaaggtctATTGAACATTGTATGAGCTTTTGTGTTATCTTGTTCTGGGCAGTATGCTTTGTTGTACTGTACTCGGGACTCTGCAATGTGATTTGTCTATTGGGGCTAAGCAGGTTAATGAACTGGCATTTGGTTGATGTGGATGATACTTTGGTTATCTTTTTGTAGAGGGAATTATTAGTCTATCATTGCTCTCCCTCAAACACTTTTTGTTTAAACTGGAGAGAAAGCCTAAGTTCAGTTTGCCTGACAGAAAGTGTTCCAGACAACAGACAGAGCAGTGgaccccttgaccttttattTACCTTTTTATTTGAATAAACATCAATGGATTTGCTCTTAAAACTCATTAGAACAATGCATTATCAAAACTGGTTAAGCTGGTCATCGTTCCCATAACACGCTTTCTCTCAACTCATTCCTCTGACAATTTATAATTTTGTATTTGTCCTTAGTTGCAATTTCCTTAGTGCCGTTACAGCTGTTTGTAGATCGCATGATTGCAGAACCCTGGCCCATTAGTACGGTTGGTATTTTAAAGGACCACGTTAAATGTTACCATTGGTTTCCCTGTTCCTTTTTAATGTTCACTCTAAGAAATAAAGCTATGAATAATGTA

Function

symbol description
ubr7 Predicted to enable ligase activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be active in cytoplasm. Orthologous to human UBR7 (ubiquitin protein ligase E3 component n-recognin 7).

NR:

description
putative E3 ubiquitin-protein ligase UBR7

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11979 UBR7; E3 ubiquitin-protein ligase UBR7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985232.1 False 2273 mRNA 0.47 11 28606271 28622894
XM_021612215.2 True 2176 mRNA 0.47 12 28606271 28624188

Neighbor

gene id symbol gene type direction distance location
si:dkey-85n7.8 NA coding downstream 124327 28478817 ~ 28481944 (-)
prima1 prima1 coding downstream 217967 28326936 ~ 28388304 (-)
ppp4r4 ppp4r4 coding downstream 428597 28050159 ~ 28177674 (-)
LOC110529732 LOC106571705 coding downstream 582346 28011797 ~ 28023925 (-)
brf1b LOC106571710 coding downstream 654821 27824150 ~ 27951450 (-)
tmem251 tmem251 coding upstream 1224 28625412 ~ 28635685 (-)
chga chga coding upstream 80661 28704849 ~ 28727911 (-)
LOC110529748 NA coding upstream 112606 28736794 ~ 28766673 (-)
si:dkey-177p2.18 LOC106571734 coding upstream 152249 28776437 ~ 28804357 (-)
LOC110529750 LOC106571688 coding upstream 198515 28822703 ~ 28844827 (-)
G693085 NA non-coding downstream 140433 28465620 ~ 28465838 (-)
G692926 NA non-coding downstream 377457 28228421 ~ 28228814 (-)
G692909 NA non-coding downstream 409740 28196155 ~ 28196531 (-)
G692879 NA non-coding downstream 455179 28150777 ~ 28151092 (-)
G692864 NA non-coding downstream 481623 28124417 ~ 28124648 (-)
G693390 itpk1 non-coding upstream 9835 28634023 ~ 28665934 (-)
G693468 NA non-coding upstream 143563 28767751 ~ 28768156 (-)
G693471 NA non-coding upstream 145813 28770001 ~ 28770212 (-)
G693488 NA non-coding upstream 160921 28785109 ~ 28785516 (-)
G693517 vipas39 non-coding upstream 249130 28873318 ~ 28876113 (-)
G693383 btbd7 other downstream 11840 28593341 ~ 28594431 (-)
G692859 NA other downstream 490223 28115736 ~ 28116048 (-)
G691747 NA other downstream 1290336 27315568 ~ 27315935 (-)
G691447 LOC106571509 other downstream 1738193 26864210 ~ 26868078 (-)
G693665 NA other upstream 334207 28958395 ~ 28958832 (-)
G694858 LOC105017690 other upstream 1377575 30001763 ~ 30062168 (-)
G696068 NA other upstream 2222714 30846902 ~ 30847209 (-)
G696073 NA other upstream 2230919 30855107 ~ 30855407 (-)
G696499 NA other upstream 2853166 31477354 ~ 31478027 (-)

Expression


Co-expression Network