RNA id: XM_021612215.2


Basic Information

Item Value
RNA id XM_021612215.2
length 2176
RNA type mRNA
GC content 0.47
exon number 12
gene id ubr7
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28606271 ~ 28624188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTAGCCgagcaagctaacgttagtcgGTTTGATACTGGGAAGATCTGTGTTATGAAGTAGCTAGCCCCAAAGACAGTTATctaaatgaattctctgatcaACGTGGGCGGTTTATCTGATCATCCAAAGATTTGCTAAGAATGGCGGCAAATGAGGGAGATGAGGCTACTGTTTCTTTGGTAGATGTTTTGGAAGAAGATGAAGAGTTGGAGAATGAGGCATCTGCTGTTTTAGCTGGTAGTGATTCTGAGAAGTGTTCCTATCCCGAGGGCTATGTGAAGCGTCAAGCCCTCTATGCCTGCAGCACCTGCACACCAAAGGGGGGCCAGCCAGCCGGAGTCTGCCTGGCCTGCTCCTACAAATGCCATGAAGGCCATGACCTTTTTGAGCTCTACACCAAAAGGAATTTCCGCTGTGACTGTGGAAACGGCAAGTTTGAAGAGATGAGGTGCAAGTTATATTCAGACAAGGATCAGTTGAACACGGAGAACAAATACAGCCACAATTTTGTTGGTCTGTATTGCACCTGTAACCGGCCATATCCAGACCCAGAAGACCCGGTTGAAGATGAGATGATACAGTGCATTGTCTGTGAGGACTGGCTTCATGGCAGGCACTTGGGTTGCCCTGTGCCAGAGTGTGTGGAGCTCCAGGAGATGGTGTGTGAGTCCTGCATGAACAATGCTCCTTTCCTGTGGGCCTACGCCACCCATCTGGCAGTGCCCGCTGAGACCAAAGCCAGCCCCTGCAAAGCAGAAGGGGAGGTGACGAATGAAGAGGGGGACCGTGAGGAGGGCAAGAACACAACAGAGGAGGCCTCCACGAGCCTCAATAACCAGGGTGAAGAGAAGGTCAAATCCAATGGGGTGCCAGGCTGCAAAAGGAGGCaccaggagatggagggaggctcGCCCTCCAAAGCCCCCTCCGAGTGCAGGCTCATGGAGCTGGGGGGCACAGGTACAGAGAGAGCAGAGTTTGGAGCTGTATTCTGGCCCTCAGCCTGGAGAACCAAACTCTGTTCCTGTGTCAGCTGCAAGCAGAAATCCTACGCTGAAGCTGGTATGTCCTTTCTCCTGGATGAGTCGGACACGGTCTTAGCCTACGAGAATAAAGGAAAGACCACAGAACAGGAGCAGGCGGGGACCGCCGAGGGTCGCGACCCCCTGATGTCGGCCCTTAATACCCTGGGCCGGGTTCAGCAGCTGGAGATAATCCACGGGTACAATGACATGAAGACTGAGCTGAAGGATTTCCTGCAGAGATTTGCTGCAGAAGGAAAGGTAGTGACTCCCGAAGACATCCGTCAGTTCTTCCAACAGCAGCAGAACCGCAAGAGACGACGGGCCAACGCGGGCCAGTACTACTGCAGCTGAGCAGTCTCCATTCAGACAACTCCCGGTCTCCCCCATCTCCACAACACCTGTCAGTATAGTTGTATTCCTTTTTCTTCTTCCCACTGAATGTCATTGCCTTGCGTCCAATATCATCTTCTAGTACAACTCCTCAGATGTTAtgtttaaacaaataaaaatgcagtaaaaaaaaaaaaaaagaaggtctATTGAACATTGTATGAGCTTTTGTGTTATCTTGTTCTGGGCAGTATGCTTTGTTGTACTGTACTCGGGACTCTGCAATGTGATTTGTCTATTGGGGCTAAGCAGGTTAATGAACTGGCATTTGGTTGATGTGGATGATACTTTGGTTATCTTTTTGTAGAGGGAATTATTAGTCTATCATTGCTCTCCCTCAAACACTTTTTGTTTAAACTGGAGAGAAAGCCTAAGTTCAGTTTGCCTGACAGAAAGTGTTCCAGACAACAGACAGAGCAGTGgaccccttgaccttttattTACCTTTTTATTTGAATAAACATCAATGGATTTGCTCTTAAAACTCATTAGAACAATGCATTATCAAAACTGGTTAAGCTGGTCATCGTTCCCATAACACGCTTTCTCTCAACTCATTCCTCTGACAATTTATAATTTTGTATTTGTCCTTAGTTGCAATTTCCTTAGTGCCGTTACAGCTGTTTGTAGATCGCATGATTGCAGAACCCTGGCCCATTAGTACGGTTGGTATTTTAAAGGACCACGTTAAATGTTACCATTGGTTTCCCTGTTCCTTTTTAATGTTCACTCTAAGAAATAAAGCTATGAATAATGTA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11979 UBR7; E3 ubiquitin-protein ligase UBR7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU788979 lncRNA downstream 140433 28465620 ~ 28465838 (-) True G693085
TU788813 lncRNA downstream 377457 28228421 ~ 28228814 (-) True G692926
TU788795 lncRNA downstream 409740 28196155 ~ 28196531 (-) True G692909
TU788761 lncRNA downstream 455179 28150777 ~ 28151092 (-) True G692879
TU788746 lncRNA downstream 481623 28124417 ~ 28124648 (-) True G692864
TU789299 lncRNA upstream 9835 28634023 ~ 28665934 (-) False G693390
TU789298 lncRNA upstream 10373 28634561 ~ 28635457 (-) True G693390
TU789383 lncRNA upstream 143563 28767751 ~ 28768156 (-) True G693468
TU789386 lncRNA upstream 145813 28770001 ~ 28770212 (-) True G693471
TU789405 lncRNA upstream 160921 28785109 ~ 28785516 (-) True G693488
XM_021612213.2 mRNA downstream 124327 28478817 ~ 28481944 (-) False si:dkey-85n7.8
XM_021612212.2 mRNA downstream 217967 28326936 ~ 28388304 (-) True prima1
XM_036985227.1 mRNA downstream 428597 28050702 ~ 28177674 (-) True ppp4r4
XM_036985225.1 mRNA downstream 428600 28050159 ~ 28177671 (-) False ppp4r4
XM_036985226.1 mRNA downstream 428601 28050159 ~ 28177670 (-) False ppp4r4
XM_021612222.2 mRNA upstream 1224 28625412 ~ 28632741 (-) False tmem251
XM_021612223.2 mRNA upstream 1224 28625412 ~ 28635685 (-) True tmem251
XM_021612225.2 mRNA upstream 80661 28704849 ~ 28727910 (-) False chga
XM_021612226.2 mRNA upstream 80661 28704849 ~ 28727911 (-) True chga
XM_021612228.2 mRNA upstream 112606 28736794 ~ 28766673 (-) True LOC110529748
TU789291 other downstream 11840 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 124373 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 490223 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 1290336 27315568 ~ 27315935 (-) True G691747
TU787231 other downstream 1738193 26864210 ~ 26868078 (-) True G691447
TU789639 other upstream 334207 28958395 ~ 28958832 (-) True G693665
TU790962 other upstream 1377575 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 1414400 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 2222714 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 2230919 30855107 ~ 30855407 (-) True G696073

Expression Profile