RNA id: XM_021612225.2


Basic Information

Item Value
RNA id XM_021612225.2
length 2332
RNA type mRNA
GC content 0.48
exon number 8
gene id chga
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28704849 ~ 28727911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTAGCTGTGATGTCATTTCCTCCTCAGCAAGCTCCATATAAAAACGCAGGTGCAGTTGCAGCAAGTTGTTCGTGGTACATTAAGGTTTGAGCGAGATAGACCACTGATACTGAAAAACGCAGGTCGCCAGAAATAACCAGGGCGGTCAAGTTGCACATAGAATGAGCCCATCATTCATCGACTCTTTCCACACACAATCGAAGGGGAACTAACATTCTAAGCTTTTGACGTTTGCTATTCCTGCCCGTTTTATTGCAACGATGATCGCGAGAGGATACTTCATTTTGACAATATTGGTTAATCGCGTTCTCTCATTGCCCGTGACTCCAACTTACCTTGAGAAAGAGGATGTCGAGGTGATGAAATGCATCGTGGAGGTTCTCGCTGATGTGCTCTCGAGGCCACACCGTTTGGCTGTCAGTCAGGAGTGCCTGAACATACTAAGGACAGATGAAAGGCTTGTGTCAATCCTCCGCCACCGCAACTTCCTCAAGGAGCTGCAGGACATTGCCGTTGAAGGAGCCAATGAGAGAGCTCAGCAGCATGTTGACATCACGGCAGATCATGTGACTAAGAAACCACAGGGTCCTCAGGGTATAGATGAGGCTGCAGATCGATCGATGTTGGCCGCTCTGGGGGGACCCGGCGAGAGGTCTATCCTGTCCCAGAAGAGGGGGaccggaggagagggagaaggggagggtgaaggagaggcggagaACAGTGcggagagggacggagagacaTCCCGTGAGAGGAACGAGATCATCAGAAAAGGCGAAGAGAAGAAGCGAGAAATGGACGAGACCCCTGACAACCGTATCTCAGATGCCATGAacaaggaggggaaagaggagggaaAGGATGTGGATGATATTgaaaagaaagaagaagaagaaggggatGAGAATGcaaaggaggaggatgaggagaagcgTGCAAGCTCAAGAGAAGACAGCGAGGAGGCTAAAACGGAGGGAGGAAACGTGACTCTAGATAAGAAAGGGGCAGAGTCTGGTGAGGTGACGGATGCACCAGAAGAGAAATATGAGGAGAAGAAAACTGCAGAGGAAAatgaagaggaggtagaggagaagaggTCTGTGTTGCCTCTGCAAGACAGTGCCGAGGCAAAgaaggagtgggaggaggaggaggaggatgaggtgaAACGCGAGGTCGCCGGTGTTAATCACTGGAGCAGAATGAGTGAGCTAGCCCGGAGTTTGCAAACAaagaagagagcgggagaggaagAAAAGTTGCAGGAAATGAAGTCACTGGAGGTCGGAGGTCAACATGAAGTGCCCCATCACTCCAAGGAGGTGGTggaagaggaagtggaggagaagaggaaggtggGAGAGGCACGGAAGAGCCCCGAAGTGAAGGAGCTCCAGATGATGGCACGCAGGGAaccgcaggagaggagagagggagaggaggaagaagggagcACCAGCAGGAAGACTGAGGACCCAGAGATTGAGAGTCTGGCGGCCATCGAGTCGGAGCTGGAGAGCGTTGCTCAGAAACTCCACGAGCTGAGACGAGGTTGAGATGAGGCTgagacgacgacgacgacgacaaccgcaccttcctcctcttcctcctccttaaCAGCCAGACCAGAGTTGTGAATTTGAGACGgagtcctccatctctctcgctcttttctaTCGAGAGAAAACCGGTGTCTGGTCCAGCCTCTTGCGACGAGGCTCTTATGGTCATCCGCCCCTCCGACACAGAAAGGACAGCAACTCCCTATGCCTTGAatccccactctgtctctctctccctgcttcagCTTGATAATAGCCAGCTTTTCATTTGATTTTGACACTGCGCAACCACTTATGTGAAAAATGAAGGCCAATCTAATTGTTATTGTTACCATGCTAAAATAGAAGGGGTTGTAGCTACAAGTTTATGTATACGTGTACATGTCAAAGATTCTATGGAGTATTTCTAGGATGTTGTACTTGATTATTATGGCTGTAACTTTAATTATCGAAAAGCCAATGCAATAACTGGACATTTTTAATGAATGACTTGACTATGATTAAATGCTGTATGGAATTTATCTAAGAAAACAAATAAATTAGATAGCATCATCTGGAGATCTTTATGCGTGTGATTCATAATGTCTGCACTGTTAGAGCCTCAATATTCCACATTCTAATTCATTTGAATTCAGTAGGGAGGAAATGATTTTGATCTCAATACAATCTCTAAGTCTGAAACGTTGATTGCTTTTTTTCTCCGTGTATTAGGGTAAGTAAGAGCCTACATTTTGTCCCATTGATAAAGTATTTTGTTTAACCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU789299 lncRNA downstream 38915 28634023 ~ 28665934 (-) False G693390
TU789298 lncRNA downstream 69392 28634561 ~ 28635457 (-) True G693390
TU788979 lncRNA downstream 239011 28465620 ~ 28465838 (-) True G693085
TU788813 lncRNA downstream 476035 28228421 ~ 28228814 (-) True G692926
TU788795 lncRNA downstream 508318 28196155 ~ 28196531 (-) True G692909
TU789383 lncRNA upstream 39841 28767751 ~ 28768156 (-) True G693468
TU789386 lncRNA upstream 42091 28770001 ~ 28770212 (-) True G693471
TU789405 lncRNA upstream 57199 28785109 ~ 28785516 (-) True G693488
TU789438 lncRNA upstream 145408 28873318 ~ 28876113 (-) True G693517
TU789450 lncRNA upstream 154393 28882303 ~ 28882931 (-) True G693527
XM_021612223.2 mRNA downstream 69164 28625412 ~ 28635685 (-) True tmem251
XM_021612222.2 mRNA downstream 72108 28625412 ~ 28632741 (-) False tmem251
XM_021612215.2 mRNA downstream 80661 28606271 ~ 28624188 (-) True ubr7
XM_036985232.1 mRNA downstream 81955 28606271 ~ 28622894 (-) False ubr7
XM_021612213.2 mRNA downstream 222905 28478817 ~ 28481944 (-) False si:dkey-85n7.8
XM_021612228.2 mRNA upstream 8884 28736794 ~ 28766673 (-) True LOC110529748
XM_021611343.2 mRNA upstream 48527 28776437 ~ 28804357 (-) True si:dkey-177p2.18
XM_021612229.2 mRNA upstream 94793 28822703 ~ 28844826 (-) False LOC110529750
XM_021612230.2 mRNA upstream 94793 28822703 ~ 28844827 (-) True LOC110529750
XM_021612234.2 mRNA upstream 122964 28850874 ~ 28859472 (-) False ahsa1a
TU789291 other downstream 110418 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 222951 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 588801 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 1388914 27315568 ~ 27315935 (-) True G691747
TU787231 other downstream 1836771 26864210 ~ 26868078 (-) True G691447
TU789639 other upstream 230485 28958395 ~ 28958832 (-) True G693665
TU790962 other upstream 1273853 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 1310678 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 2118992 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 2127197 30855107 ~ 30855407 (-) True G696073

Expression Profile