LOC110529223 (snw1)


Basic Information

Item Value
gene id LOC110529223
gene name snw1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29046423 ~ 29096035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110529223
atgggccccatcaaagagcTCAGAGAGGTaggcatgggccccatcaaagagcTCAGAGAGGTaggcatgggccccatcaaagagAGGGAAGTGGCCACAGACCTGGCAGTATGGTTCaagaacaacaacctcttcctcactgtcagcaagacaaaggatctgATCAATGACAATTTCCTACCGGCGCCGACTCAGTtgtcccaggaccagctggagtCCGAGTAGAGAGCCCGGACAAAGAGGTCCCACTCCACCGCCCTCGTCTCCTCCCGCAGACAACCTCCTCCCTACGGCTACAGGAATAGCTGCATGCCCCGCTCTCTGGAAGACTTTTGAGATGGCTTTGCGTTCCCTGAGATCCACGTGGCACAGTTCCCTCTGGAGATGGGAAGGAAGAAGAAGCACTCCAAAACCCTGGCTGTACAGGTGGACGGGGAGGCCAAGATCAAATACGACGCCATCGCCAGACAGGGACAGGGCAAGGACGTGATTTTCAGTAAGTACTCAGACCTGCTTCCTAAGGAAGTGCTGAGCGACTATGCCCCAGAGTTGCAGAAGCCTGACGAGGAGGCTGTCAAATAGCTGACGGAGAAGACCCGCGATGCTCTGCTGAAGCAGGTCTCTCAGAAGATAGCTGCAGCTATGCCTGTGAGGGCAGCTGACAAACAGGCCCCAGCACAGTACATCAGGTATGGATTTTGAATGTGATGGATGATGCCAACTGTTGTTTATGAGTTTCTCCCTTTTCAAAATGGAAGATAATACAGGGTGTTACGTATGGTGGAGATGCAGAAGGACCCCATGGAGCCCCACGCGTCAAGTAAGATCAATAAGAAGATTCCTGGTggacctccctcccctcctgcaCCTGCCATGCACTCGCCAAGCAGAAAGGTACCGTTGGGGTTCAGACAGACTTGGAAGATTCCTCCCTGCATCTCAAACTGGAAGAACGCAAAGATATACCaactctTTACACCACCCCCCCTGGACAAGCATCTGGAAGCGTACGGTAGAGGACTGCAGACCGTTCACATCAATGACAACTTTGCCAAACTGTCCGAGGCCCTCTACATTGCTGACAGAAAGGCCAGAGAGGATGTGGAGATGAGATCCCAGGTGGAGAAGAAGATGGCCCAGAAAGAGAAGTAGAAGAAGGAGGAAAAACTCAAGAGAGCTGGCTCAGATGGCGCGAGAACGCAGGGCAGGGATCAAAGGTGACAGAGGTGGCGAGGACGGTGAGGCCAGAGAGCGTGACGAGATCCGCCATgacaggaggaaagagagacagcacGACAGGAACATCTCCCGAGCCTCCCCGATAAGAAGGTCGAAGCTACAGAGAGACCAGGACAGGGACGTCAGTGAGCTCATCGCTCTGGTTCAGCCCAACCCTAGAGCCTCCAGTGAGGCTCAGTACGACTATTCAACCAGAccaagggtaTGGACAGCGGTTTTGCAGGCGGGGAGGATGAGATGTACAATGTGTACGACCAGCCGTTCAGGACTGGCAGAGACATGGCCCAGAACATCTACCGGCCCACCAAGAGCTCTGACAAGGACATGTATGGAGACGACCTGGACAAGCTCATGCAGAGCAACAGgTTTGTTCCTGACCGTGAGTTCTCTGGTACGGATCACGGTCCTCGTCGTGACGACCCGTCCAGTTTGAGGAGGATCCCTTCGGTCTGGACAAGTTTTTGGAGGAGGTTAAGCAGCACGGGGGCTCCACGAGACCCTCCACCAGCAGAGGCTCCACGAGACCCTACACCAGCAGAGGCTCCAAGAGAACCCTCCACCAGCAGAGGCTCCAAGAGAACCCTCCACCAGCAGAGGCTCCAAGGACTATGACCATGACAAGAAACGCAGGAAGGAGTGATTGGAACAAGACGGAGACCCTCGGTCTGATGGGAAGGGAGGGTAGCGTTCAGTATGCATAAAAAATTCAGAAGTCACTGAATGTGTTTTTTCACTTGAACGTAGGCGTCACCTGAACGCATCCAATGAGAATGGGCCTTTTTGTTTGAAGCTGTTTTCTCCTTTCTGTACCTACTGAATGTAACCCTGGGTTTTTGGGAGGACGTGAGGGAAAgttgtggaggagagggaggaaaagttgtggatgagggagggagagttgggaCCCTgacctctgtttgtgtgtgttgtatggctgaacacgccccccccccccaggaactAGCAGGGATTATTTGATGATAATGACGTTTTCCTTTACAGCATCCCTTTATCTTTATGTACAGCACCATCCTGCCTGTAACGTGAGCTTTAAGTAAAGCCCCCTAGTATTTCTAAGAAATATTATTATTACCCCGGAGAAGTCTGTGCTAGTAAAAATGTTATAAACCTTTGTGATCAGATTTTACAGTGCTATGGTGTCATACAAAATGCACTAACAGAATGCAATCGTCGAGGTTATTCAACACCAACCAGAAGAGAACCCACTGCAactgggagggactacctgaCTCATCCAATAAGTGTCTTGTCTGTTTCTAAACATGTTCTATTGCATACcgtaatgaacatgacccagatgCATTCTCCTCAGTCAATGAATGCAGACCCTCTGTTAGGTCTATTCCAGTTGTAATCGTTTTATTTAGAGTGCCACAGTTTCCCCTGATTTTTATTTTCATCACATCTTGAATAATGCCTCGCGTTTACATGAGATGAAAGACCCGAAGTGGCGGAGGACCCATCAATTCCCAAGCGTTACCAACGGAAATATGAggcgcatcccaaatggcaccctattacctacatCGGGGTATCCCAAAGTCGGTCCTGCACCACCGGTGTTGTTacaacaaaacgtgcaccccttggggtccacaggactgagtttgggaaaccctgccctacatagtgcactacctttgtccCAGTATAAGGCTCTAGTCCTGTAAATATTTGTGcactgaatagggtgccatttgggccgcAATCCAAACTGTATGGGAGATTAGAGTTGATTAGAACAAAACTGGTTCCATTAATTATAAATCTTAATGATTTATGGAGCTACATCCAGGCCTCAAAGAAATAATCAACaggacatgatacagtccagcaGACTGGGGATTTCTCAGTATTACGCTGTGTCAGCCGGCCCTCATGCTTGAATGGTGGGTAGCTTAGCAGAGGGTTTACTCTATAGATGTATTTAGTTCAATTGAAATTAAGTTGTGGATTTCTACATTTAGCTCAGGCTTTTGTATACTCTGTCAGAGGTAGGTCATTATCAGTCCAATAGCGCAAACTTAAATACTGTTGTCAGTTGTAGAGACAAATTCTGTAGGGTTGTCAAGTGCAGAATAAGATGAAACGCCAAAATCAAAAGCTGCGACGTGTCTTCATTTCAACTTTATGTCAACGTCTTTCTCTTTCACATAACTGTTTACCCCGCGTTTTCTTCTACCTCCCAGGTGTACTGTAATTCTATTTGCGGTTGAACTACATTTTCTCCTCCCAAACACTACAATCTGGCCCCTAGAGTTCCTACTCAGACAGAAAAGACCAGACTGATACCAGAGCAAAGCAATAACTACAGCATCATCACAGGATGCCAAGTTCAGCAGCTTAGATGGGAGACTGTTCTCTGACTTTATTTCGCCCCCCCGTGCCGATTCTCCGATAGACAGTTTTCACACTCCACTTCACCAGTGTGTCACTTCAAGGCTTCGCCACCTGTCTCTAGTCACAGCTCTTATGTTGCCATCAGGATTCATTTCCTCCCCCAGTGAGAGGTCGGGCTGAACGTGATGCGCTCTTACGAACACtacaccaagacacacacacactgtttgtttACAGGCTTCACAGGgatgacatggtgtgtgtgtgcctgcgtgtacTCTTGTCTCCACAGCCCTCTGAGAAACATTAAAGCGTGACTAGCTTCATTTGTAAAGTGCTGCGTTTTATTGTGTTGACCTTTAGCATGTGGAGAGGAGCGGAATCGGGGATTGTCATCTGATAGCCTCTCAGAGGGAGATGCTTTTCAGGCCACGATGGAGACAATGGACTCGCTGTGGAGGTGTGAGACAAGCCGTGGGGTGAGAGAATCAGGCAACAGCAATATATTTATTGTGGGTTGTTCAGACACAAATATGCACCCTTGATCTGTAATGTTGATGTGTTGACATCATAGGTCACAGGACTAAGAGATATCCTGACAAAGTGACCTTGACCTCTGAGCCTTTGTATTGTGCTATACAACTCCGGCTCAGTGTTTCCTAGTTAGGCTGTATGGTCAGGGAAAGACTCCTGGCACAAATGATGGTTTAAAATGATATCTACCTGGAGTATTATAATGGGACTGGCCAAGCCCTTTACACAACAATATCAGGAACACCTCAGCCTTTATGATGATGCTATGGTCTACAAATTTAATTTAGCTGTTGAAGCATCCCACTGGGGGGGAAATCAATGTTGTTTCTGTCATTCTGTCAACAAAAATCTGATGACGTTGAATATGGAAAACGTGTGTTTTCCATATCAATGAGTTGAATCGATATGGAAAACTGATTGGGTTTGGAAAATAGCCATCAACATAATGGAATTGATCtgaaatccaatgacatggtgaatttGTTGTTGAATTCAACCAAATGTACATCAAAattagatgttgaactgacatctgtgtcCAGTGGGTAAGCCCTACCACAGACACCCTCAGTGTACAGTATTCCTTCAATTCTCAGTTGAGCTTTGACCATTATTGTTGAGACTGTGAGGTGTGTTTAATTTTCTCAGACAGCTTGATAATGGCTCTTCACTACTCTGTTGTTTGGGTTGTGAATGTGGAACAGTGGAAGACGAATGGGTTTCTTATTCATGGAGGTAACAAAGAGGAAATTGGTTCCTTTGGCTGGCTTTTGTTTGGCTTTGAACATAAACAGCCAAATACTATTGTGCCCTTCCATAATGGAATCTTCAATGTGCAGACAGAACACATACATGATTGATAGGTTCTTATCTTTGCTCCAAAATGGAGCAAAATCCAGAAAGGAACAATATTGAGTTGTACaggaaatatgtatttatttcgCTGTAGTCACTTAAAGGGGGGTTTCTAGTTATTTGCAATGTGTTTCTGTGCTATTTTTCTTTCCTGTTAATAGTGGGTAGGCGAAAGCGATTGGGTTTAGTGATAAATGGGTGTGCTCCACGATCATTTTGACCTGTCTAAAGTTCTGGACAAAGATCTTACAATGTAGATTTGTTTTCCCACTGCTTATAAGGTCATGCTGAAATCCATCTCTTTGTCCCTTGCTCTTTCCATATAATTGCCACCTCTGTTTTTAGAGTTTTGAATCAGTCTGAGTATGGACAATTTGATTCTACTGTCAATGTAAATGATAAACAGAAGGACATTCTCATTCAGTCCCCAGATAACCTACCATCTAAGGAATCCTGTCATCTTCAGCCAGTCACTTTCTTTTCGTTAGGTCTTCCATGTTGCCTGAATTGCATCATTCACTCATCACATTGCCAGACTAGCCCTGGTAGTCTAGGTTCTGAGCTTTAAACTCATTGGATTAGTCTCacttgactgacattcatgtggCTTGTGATTTGGCTATTGCTCGCGAGACTAGTCATTTGATGACTGAGCAGTCAGTCAGGGAGTGGGTATATAGCCGAGGCTACCCTCTGAGCCCTGGAAAGCTGCAGAGAGAGTCTCCGTTCCTCAGCAGTGGCCCATGTCTCCTGTGTGCCACAAGACTGTCTTAGCCCACTGAGTTAAAGCCTAATCATTACGCAAGAcctcaggcaaggttactcatcaagCAAGTGTGGTTACGAACCACCTCTGTTGCACTGGGACAACCCTGTGAATCCTGGAGAGCTGAACAGAGCCTCTCTCCTCAGCTCCAGTCCTTTCCTCTCATTTCTGCTTTTCAGTATTATACTAATGCTAAAAtgttttctattctactgagccatttacttaaTTGTCATATTCTTATATTTTCTTATTGTAGtcgcattgtcgagaaggaatcTCCAAGAAGCATTTTGTAGgatggtgtataccatgtgtatcccgtacatacgactaataaagcTTGGTACTTCAaactctcttcccctcccttttcctcccctcccctctcctctcttcccctccattttcctcccctcccctctcctctcttcccctctcctcttccattcCCAGGGAGGATAATCCATTATAAGGAGAAGGTTTAGACAGCCGTAAAAACACTCTAATGGTTGTGTCAGTCAGAGACAAccctccccccaacacacacacacacacacacacagtggctgagagagaggcaTGGCTGCCTGGAATTCAGTGTTtagcagactgacagctcaggaaTGTGTTGTGAAGTGTGATTGAGTGATGGCTGGGACAAAGTCTTCATTTAATAAAAGACCAGCTGTGTTATTGTGGGGCCTAATGGCTAATAGTAGTGTCCTTTGGTTTTCAGATGGTGGCGATGTCTACGATGATGATTTCTTCCACGTTTCACTTGCTCCTCTTTGCTTCCCCTCCCTATCTTCTAACATTCCCTGGTAAATTATAATAGGCAATGATTCTAAGATCTTCAGAAATCATCATCCCCCATTAACCATACACATACAGTAAATTGAAATGTCACATTGTTAGATGTAGTTGATATGGGGCATTTTTTGTCCTCTGCAATGTATTGACCGACAATAACATTTGAGATGAATTCATCCATCTCCTGGTTGGGAGGACCTTAGCCGGTGCCGACAATGTGATTTGTAATGCTTAGGTTTATAAATAAATGGACTGCCAGGTGATCATCTATTGTCTTTCATCAGCCTGTATATTAGAGCTTATTTCATCCATTATTTGTTCATTTATTATTAAGTGCATGGCGTTAAAGTATGACAAATGACGTTGaattatgcgtgtgtgtgtgtgtgtgtgtgtgtgttattttgtcGAAACATCGGTCTCTAATAGGCTGTCTAGGGTGTATAGGGAGAGATTGATGCCCCTTGATGATTTCATTAGATCACATCAACATAGGGAAATGACTACAAAGGCTATGAATATATCATCTAGGCATTAGCCTAGATCATTAATCAATAGGCAGGTAGcatagtgttgggccagtaatcgaaaagTCACAGGTTCGAATACTCGAGCCGACAAGGTGATAaatgtcaatgtgcccttgagcagggcacttaaccttaatttgctccaggggtgacCCACTACTAccactgaccctgtaaaacaacacatttcactgcacctatccagtgtatgtgacaaaactATTTTTTAAATCTACAGTAGGGAGTAAAGAAACCCATTAATTGAATGTAAAACACTGCCACGCTCTGACCTttaatatctctgttttctttatattttggttaggtcagggtgtgacgagggtgggtatgctagtttttgtattgtctaggggttttgtatgtctaggtatttatatgtctat
>TU789682
TGAAGTGTGATTGAGTGATGGCTGGGACAAAGTCTTCATTTAATAAAAGACCAGCTGTGTTATTGTGGGGCCTAATGGCTAATAGTAGTGTCCTTTGGTTTTCAGATGGTGGCGATGTCTACGATGATGATTTCTTCCACGTTTCACTTGCTCCTCTTTGCTTCCCCTCCCTATCTTCTAACATTCCCTGGTAAATTATAATAGGCAATGATTCTAAGATCTTCAGAAATCATCATCCCCCATTAACCATACACATACAGTAAATTGAAATGTCACATTGTTAGATGTAGTTGATATGGGGCATTTTTTGTCCTCTGCAATGTATTGACCGACAATAACATTTGAGATGAATTCATCCATCTCCTGGTTGGGAG
>TU789683
TCAGGCCACGATGGAGACAATGGACTCGCTGTGGAGGTGTGAGACAAGCCGTGGGGTGAGAGAATCAGGCAACAGCAATATATTTATTGTGGGTTGTTCAGACACAAATATGCACCCTTGATCTGTAATGTTGATGTGTTGACATCATAGGTCACAGGACTAAGAGATATCCTGACAAAGTGACCTTGACCTCTGAGCCTTTGTATTGTGCTATACAACTCCGGCTCAGTGTTTCCTAGTTAGGCTGTATGGTCAGGGAAAGACTCCTGGCACAAATGATGGTTTAAAATGATATCTACCTGGAGTATTATAATGGGACTGGCCAAGCCCTTTACACAACAATATCAGGAACACCTCAGC
>TU789681
TCAGTATTACGCTGTGTCAGCCGGCCCTCATGCTTGAATGGTGGGTAGCTTAGCAGAGGGTTTACTCTATAGATGTATTTAGTTCAATTGAAATTAAGTTGTGGATTTCTACATTTAGCTCAGGCTTTTGTATACTCTGTCAGAGGTAGGTCATTATCAGTCCAATAGCGCAAACTTAAATACTGTTGTCAGTTGTAGAGACAAATTCTGTAGGGTTGTCAAGTGCAGAATAAGATGAAACGCCAAAATCAAAAGCTGCGACGTGTCTTCATTTCAACTTTATGTCAACGTCTTTCTCTTTCACATAACTGTTTACCCCGCGTTTTCTTCTACCTCCCAGGTGTACTGTAATTCTATTTGCGGTTGAACTACATTTTCTCCTCCCAAACACTACAATCTGGCCCCTAGAGTTCCTACTCAGACAGAAAAGACCAGACTGATACCAGAGCAAAGCAATAACTACAGCATCATCACAGGATGCCAAGTTCAGCAGCTTAGATGGGAGACTGTTCTCTGACTTTATTTCGCCCCCCCGTGCCGATTCTCCGATAGACAGTTTTCACACTCCACTTCACCAGTGTGTCACTTCAAGGCTTCGCCACCTGTCTCTAGTCACAGCTCTTATGTTGCCATCAGGATTCATTTCCTCCCCCAGTGAGAGGTCGGGCTGAACG

Function

symbol description
snw1 Acts upstream of or within neural crest formation and positive regulation of BMP signaling pathway. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Is expressed in ectoderm; mesoderm; and neural plate. Human ortholog(s) of this gene implicated in breast cancer and pancreatic cancer. Orthologous to human SNW1 (SNW domain containing 1).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0014029 neural crest formation biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110529223 False 7502 mRNA 0.44 14 29046423 29096035
TU789682 False 374 lncRNA 0.40 1 29047162 29047535
TU789683 False 360 lncRNA 0.45 1 29049541 29049900
TU789681 True 674 lncRNA 0.44 1 29050142 29050815

Neighbor

gene id symbol gene type direction distance location
lcb2 lcb2 coding downstream 16707 29025283 ~ 29029716 (-)
LOC110529757 LOC106571682 coding downstream 41263 28990257 ~ 29005160 (-)
ahsa1a LOC106571686 coding downstream 186312 28850874 ~ 28860111 (-)
LOC110529750 LOC106571688 coding downstream 201596 28822703 ~ 28844827 (-)
si:dkey-177p2.18 LOC106571734 coding downstream 242066 28776437 ~ 28804357 (-)
LOC118965622 NA coding upstream 106351 29202386 ~ 29203480 (-)
LOC118965623 NA coding upstream 108115 29204150 ~ 29208928 (-)
LOC118965608 NA coding upstream 116117 29212152 ~ 29213579 (-)
LOC118965624 NA coding upstream 117752 29213787 ~ 29223764 (-)
LOC110529760 LOC106571680 coding upstream 364955 29460990 ~ 29465444 (-)
G693703 NA non-coding downstream 5201 29040542 ~ 29041222 (-)
G693657 NA non-coding downstream 101220 28944973 ~ 28945203 (-)
G693654 NA non-coding downstream 103157 28943031 ~ 28943266 (-)
G693653 NA non-coding downstream 103420 28942260 ~ 28943003 (-)
G693652 NA non-coding downstream 104308 28941862 ~ 28942115 (-)
G693765 NA non-coding upstream 3730 29099765 ~ 29099978 (-)
G693777 NA non-coding upstream 10967 29107002 ~ 29107320 (-)
G693800 NA non-coding upstream 27062 29123097 ~ 29123331 (-)
G693815 NA non-coding upstream 40839 29136874 ~ 29137074 (-)
G693816 NA non-coding upstream 41213 29137248 ~ 29137451 (-)
G693665 NA other downstream 87591 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 451992 28593341 ~ 28594431 (-)
si:dkey-85n7.8 NA other downstream 564525 28478817 ~ 28481944 (-)
G692859 NA other downstream 930375 28115736 ~ 28116048 (-)
G691747 NA other downstream 1730488 27315568 ~ 27315935 (-)
G694858 LOC105017690 other upstream 905728 30001763 ~ 30062168 (-)
G696068 NA other upstream 1750867 30846902 ~ 30847209 (-)
G696073 NA other upstream 1759072 30855107 ~ 30855407 (-)
G696499 NA other upstream 2381319 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 2561691 31657632 ~ 31703525 (-)
G693710 NA non-coding upstream 5084 29055899 ~ 29056171 (-)
G693716 NA non-coding upstream 10524 29061339 ~ 29061811 (-)
G693720 NA non-coding upstream 13779 29064594 ~ 29064976 (-)
G693722 NA non-coding upstream 14725 29065540 ~ 29065804 (-)
G693736 NA non-coding upstream 23995 29074810 ~ 29075431 (-)

Expression


Co-expression Network