RNA id: LOC110529223


Basic Information

Item Value
RNA id LOC110529223
length 7502
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110529223
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29046423 ~ 29096035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgggccccatcaaagagcTCAGAGAGGTaggcatgggccccatcaaagagcTCAGAGAGGTaggcatgggccccatcaaagagAGGGAAGTGGCCACAGACCTGGCAGTATGGTTCaagaacaacaacctcttcctcactgtcagcaagacaaaggatctgATCAATGACAATTTCCTACCGGCGCCGACTCAGTtgtcccaggaccagctggagtCCGAGTAGAGAGCCCGGACAAAGAGGTCCCACTCCACCGCCCTCGTCTCCTCCCGCAGACAACCTCCTCCCTACGGCTACAGGAATAGCTGCATGCCCCGCTCTCTGGAAGACTTTTGAGATGGCTTTGCGTTCCCTGAGATCCACGTGGCACAGTTCCCTCTGGAGATGGGAAGGAAGAAGAAGCACTCCAAAACCCTGGCTGTACAGGTGGACGGGGAGGCCAAGATCAAATACGACGCCATCGCCAGACAGGGACAGGGCAAGGACGTGATTTTCAGTAAGTACTCAGACCTGCTTCCTAAGGAAGTGCTGAGCGACTATGCCCCAGAGTTGCAGAAGCCTGACGAGGAGGCTGTCAAATAGCTGACGGAGAAGACCCGCGATGCTCTGCTGAAGCAGGTCTCTCAGAAGATAGCTGCAGCTATGCCTGTGAGGGCAGCTGACAAACAGGCCCCAGCACAGTACATCAGGTATGGATTTTGAATGTGATGGATGATGCCAACTGTTGTTTATGAGTTTCTCCCTTTTCAAAATGGAAGATAATACAGGGTGTTACGTATGGTGGAGATGCAGAAGGACCCCATGGAGCCCCACGCGTCAAGTAAGATCAATAAGAAGATTCCTGGTggacctccctcccctcctgcaCCTGCCATGCACTCGCCAAGCAGAAAGGTACCGTTGGGGTTCAGACAGACTTGGAAGATTCCTCCCTGCATCTCAAACTGGAAGAACGCAAAGATATACCaactctTTACACCACCCCCCCTGGACAAGCATCTGGAAGCGTACGGTAGAGGACTGCAGACCGTTCACATCAATGACAACTTTGCCAAACTGTCCGAGGCCCTCTACATTGCTGACAGAAAGGCCAGAGAGGATGTGGAGATGAGATCCCAGGTGGAGAAGAAGATGGCCCAGAAAGAGAAGTAGAAGAAGGAGGAAAAACTCAAGAGAGCTGGCTCAGATGGCGCGAGAACGCAGGGCAGGGATCAAAGGTGACAGAGGTGGCGAGGACGGTGAGGCCAGAGAGCGTGACGAGATCCGCCATgacaggaggaaagagagacagcacGACAGGAACATCTCCCGAGCCTCCCCGATAAGAAGGTCGAAGCTACAGAGAGACCAGGACAGGGACGTCAGTGAGCTCATCGCTCTGGTTCAGCCCAACCCTAGAGCCTCCAGTGAGGCTCAGTACGACTATTCAACCAGAccaagggtaTGGACAGCGGTTTTGCAGGCGGGGAGGATGAGATGTACAATGTGTACGACCAGCCGTTCAGGACTGGCAGAGACATGGCCCAGAACATCTACCGGCCCACCAAGAGCTCTGACAAGGACATGTATGGAGACGACCTGGACAAGCTCATGCAGAGCAACAGgTTTGTTCCTGACCGTGAGTTCTCTGGTACGGATCACGGTCCTCGTCGTGACGACCCGTCCAGTTTGAGGAGGATCCCTTCGGTCTGGACAAGTTTTTGGAGGAGGTTAAGCAGCACGGGGGCTCCACGAGACCCTCCACCAGCAGAGGCTCCACGAGACCCTACACCAGCAGAGGCTCCAAGAGAACCCTCCACCAGCAGAGGCTCCAAGAGAACCCTCCACCAGCAGAGGCTCCAAGGACTATGACCATGACAAGAAACGCAGGAAGGAGTGATTGGAACAAGACGGAGACCCTCGGTCTGATGGGAAGGGAGGGTAGCGTTCAGTATGCATAAAAAATTCAGAAGTCACTGAATGTGTTTTTTCACTTGAACGTAGGCGTCACCTGAACGCATCCAATGAGAATGGGCCTTTTTGTTTGAAGCTGTTTTCTCCTTTCTGTACCTACTGAATGTAACCCTGGGTTTTTGGGAGGACGTGAGGGAAAgttgtggaggagagggaggaaaagttgtggatgagggagggagagttgggaCCCTgacctctgtttgtgtgtgttgtatggctgaacacgccccccccccccaggaactAGCAGGGATTATTTGATGATAATGACGTTTTCCTTTACAGCATCCCTTTATCTTTATGTACAGCACCATCCTGCCTGTAACGTGAGCTTTAAGTAAAGCCCCCTAGTATTTCTAAGAAATATTATTATTACCCCGGAGAAGTCTGTGCTAGTAAAAATGTTATAAACCTTTGTGATCAGATTTTACAGTGCTATGGTGTCATACAAAATGCACTAACAGAATGCAATCGTCGAGGTTATTCAACACCAACCAGAAGAGAACCCACTGCAactgggagggactacctgaCTCATCCAATAAGTGTCTTGTCTGTTTCTAAACATGTTCTATTGCATACcgtaatgaacatgacccagatgCATTCTCCTCAGTCAATGAATGCAGACCCTCTGTTAGGTCTATTCCAGTTGTAATCGTTTTATTTAGAGTGCCACAGTTTCCCCTGATTTTTATTTTCATCACATCTTGAATAATGCCTCGCGTTTACATGAGATGAAAGACCCGAAGTGGCGGAGGACCCATCAATTCCCAAGCGTTACCAACGGAAATATGAggcgcatcccaaatggcaccctattacctacatCGGGGTATCCCAAAGTCGGTCCTGCACCACCGGTGTTGTTacaacaaaacgtgcaccccttggggtccacaggactgagtttgggaaaccctgccctacatagtgcactacctttgtccCAGTATAAGGCTCTAGTCCTGTAAATATTTGTGcactgaatagggtgccatttgggccgcAATCCAAACTGTATGGGAGATTAGAGTTGATTAGAACAAAACTGGTTCCATTAATTATAAATCTTAATGATTTATGGAGCTACATCCAGGCCTCAAAGAAATAATCAACaggacatgatacagtccagcaGACTGGGGATTTCTCAGTATTACGCTGTGTCAGCCGGCCCTCATGCTTGAATGGTGGGTAGCTTAGCAGAGGGTTTACTCTATAGATGTATTTAGTTCAATTGAAATTAAGTTGTGGATTTCTACATTTAGCTCAGGCTTTTGTATACTCTGTCAGAGGTAGGTCATTATCAGTCCAATAGCGCAAACTTAAATACTGTTGTCAGTTGTAGAGACAAATTCTGTAGGGTTGTCAAGTGCAGAATAAGATGAAACGCCAAAATCAAAAGCTGCGACGTGTCTTCATTTCAACTTTATGTCAACGTCTTTCTCTTTCACATAACTGTTTACCCCGCGTTTTCTTCTACCTCCCAGGTGTACTGTAATTCTATTTGCGGTTGAACTACATTTTCTCCTCCCAAACACTACAATCTGGCCCCTAGAGTTCCTACTCAGACAGAAAAGACCAGACTGATACCAGAGCAAAGCAATAACTACAGCATCATCACAGGATGCCAAGTTCAGCAGCTTAGATGGGAGACTGTTCTCTGACTTTATTTCGCCCCCCCGTGCCGATTCTCCGATAGACAGTTTTCACACTCCACTTCACCAGTGTGTCACTTCAAGGCTTCGCCACCTGTCTCTAGTCACAGCTCTTATGTTGCCATCAGGATTCATTTCCTCCCCCAGTGAGAGGTCGGGCTGAACGTGATGCGCTCTTACGAACACtacaccaagacacacacacactgtttgtttACAGGCTTCACAGGgatgacatggtgtgtgtgtgcctgcgtgtacTCTTGTCTCCACAGCCCTCTGAGAAACATTAAAGCGTGACTAGCTTCATTTGTAAAGTGCTGCGTTTTATTGTGTTGACCTTTAGCATGTGGAGAGGAGCGGAATCGGGGATTGTCATCTGATAGCCTCTCAGAGGGAGATGCTTTTCAGGCCACGATGGAGACAATGGACTCGCTGTGGAGGTGTGAGACAAGCCGTGGGGTGAGAGAATCAGGCAACAGCAATATATTTATTGTGGGTTGTTCAGACACAAATATGCACCCTTGATCTGTAATGTTGATGTGTTGACATCATAGGTCACAGGACTAAGAGATATCCTGACAAAGTGACCTTGACCTCTGAGCCTTTGTATTGTGCTATACAACTCCGGCTCAGTGTTTCCTAGTTAGGCTGTATGGTCAGGGAAAGACTCCTGGCACAAATGATGGTTTAAAATGATATCTACCTGGAGTATTATAATGGGACTGGCCAAGCCCTTTACACAACAATATCAGGAACACCTCAGCCTTTATGATGATGCTATGGTCTACAAATTTAATTTAGCTGTTGAAGCATCCCACTGGGGGGGAAATCAATGTTGTTTCTGTCATTCTGTCAACAAAAATCTGATGACGTTGAATATGGAAAACGTGTGTTTTCCATATCAATGAGTTGAATCGATATGGAAAACTGATTGGGTTTGGAAAATAGCCATCAACATAATGGAATTGATCtgaaatccaatgacatggtgaatttGTTGTTGAATTCAACCAAATGTACATCAAAattagatgttgaactgacatctgtgtcCAGTGGGTAAGCCCTACCACAGACACCCTCAGTGTACAGTATTCCTTCAATTCTCAGTTGAGCTTTGACCATTATTGTTGAGACTGTGAGGTGTGTTTAATTTTCTCAGACAGCTTGATAATGGCTCTTCACTACTCTGTTGTTTGGGTTGTGAATGTGGAACAGTGGAAGACGAATGGGTTTCTTATTCATGGAGGTAACAAAGAGGAAATTGGTTCCTTTGGCTGGCTTTTGTTTGGCTTTGAACATAAACAGCCAAATACTATTGTGCCCTTCCATAATGGAATCTTCAATGTGCAGACAGAACACATACATGATTGATAGGTTCTTATCTTTGCTCCAAAATGGAGCAAAATCCAGAAAGGAACAATATTGAGTTGTACaggaaatatgtatttatttcgCTGTAGTCACTTAAAGGGGGGTTTCTAGTTATTTGCAATGTGTTTCTGTGCTATTTTTCTTTCCTGTTAATAGTGGGTAGGCGAAAGCGATTGGGTTTAGTGATAAATGGGTGTGCTCCACGATCATTTTGACCTGTCTAAAGTTCTGGACAAAGATCTTACAATGTAGATTTGTTTTCCCACTGCTTATAAGGTCATGCTGAAATCCATCTCTTTGTCCCTTGCTCTTTCCATATAATTGCCACCTCTGTTTTTAGAGTTTTGAATCAGTCTGAGTATGGACAATTTGATTCTACTGTCAATGTAAATGATAAACAGAAGGACATTCTCATTCAGTCCCCAGATAACCTACCATCTAAGGAATCCTGTCATCTTCAGCCAGTCACTTTCTTTTCGTTAGGTCTTCCATGTTGCCTGAATTGCATCATTCACTCATCACATTGCCAGACTAGCCCTGGTAGTCTAGGTTCTGAGCTTTAAACTCATTGGATTAGTCTCacttgactgacattcatgtggCTTGTGATTTGGCTATTGCTCGCGAGACTAGTCATTTGATGACTGAGCAGTCAGTCAGGGAGTGGGTATATAGCCGAGGCTACCCTCTGAGCCCTGGAAAGCTGCAGAGAGAGTCTCCGTTCCTCAGCAGTGGCCCATGTCTCCTGTGTGCCACAAGACTGTCTTAGCCCACTGAGTTAAAGCCTAATCATTACGCAAGAcctcaggcaaggttactcatcaagCAAGTGTGGTTACGAACCACCTCTGTTGCACTGGGACAACCCTGTGAATCCTGGAGAGCTGAACAGAGCCTCTCTCCTCAGCTCCAGTCCTTTCCTCTCATTTCTGCTTTTCAGTATTATACTAATGCTAAAAtgttttctattctactgagccatttacttaaTTGTCATATTCTTATATTTTCTTATTGTAGtcgcattgtcgagaaggaatcTCCAAGAAGCATTTTGTAGgatggtgtataccatgtgtatcccgtacatacgactaataaagcTTGGTACTTCAaactctcttcccctcccttttcctcccctcccctctcctctcttcccctccattttcctcccctcccctctcctctcttcccctctcctcttccattcCCAGGGAGGATAATCCATTATAAGGAGAAGGTTTAGACAGCCGTAAAAACACTCTAATGGTTGTGTCAGTCAGAGACAAccctccccccaacacacacacacacacacacacagtggctgagagagaggcaTGGCTGCCTGGAATTCAGTGTTtagcagactgacagctcaggaaTGTGTTGTGAAGTGTGATTGAGTGATGGCTGGGACAAAGTCTTCATTTAATAAAAGACCAGCTGTGTTATTGTGGGGCCTAATGGCTAATAGTAGTGTCCTTTGGTTTTCAGATGGTGGCGATGTCTACGATGATGATTTCTTCCACGTTTCACTTGCTCCTCTTTGCTTCCCCTCCCTATCTTCTAACATTCCCTGGTAAATTATAATAGGCAATGATTCTAAGATCTTCAGAAATCATCATCCCCCATTAACCATACACATACAGTAAATTGAAATGTCACATTGTTAGATGTAGTTGATATGGGGCATTTTTTGTCCTCTGCAATGTATTGACCGACAATAACATTTGAGATGAATTCATCCATCTCCTGGTTGGGAGGACCTTAGCCGGTGCCGACAATGTGATTTGTAATGCTTAGGTTTATAAATAAATGGACTGCCAGGTGATCATCTATTGTCTTTCATCAGCCTGTATATTAGAGCTTATTTCATCCATTATTTGTTCATTTATTATTAAGTGCATGGCGTTAAAGTATGACAAATGACGTTGaattatgcgtgtgtgtgtgtgtgtgtgtgtgtgttattttgtcGAAACATCGGTCTCTAATAGGCTGTCTAGGGTGTATAGGGAGAGATTGATGCCCCTTGATGATTTCATTAGATCACATCAACATAGGGAAATGACTACAAAGGCTATGAATATATCATCTAGGCATTAGCCTAGATCATTAATCAATAGGCAGGTAGcatagtgttgggccagtaatcgaaaagTCACAGGTTCGAATACTCGAGCCGACAAGGTGATAaatgtcaatgtgcccttgagcagggcacttaaccttaatttgctccaggggtgacCCACTACTAccactgaccctgtaaaacaacacatttcactgcacctatccagtgtatgtgacaaaactATTTTTTAAATCTACAGTAGGGAGTAAAGAAACCCATTAATTGAATGTAAAACACTGCCACGCTCTGACCTttaatatctctgttttctttatattttggttaggtcagggtgtgacgagggtgggtatgctagtttttgtattgtctaggggttttgtatgtctaggtatttatatgtctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU789678 lncRNA downstream 5201 29040542 ~ 29041222 (-) True G693703
TU789631 lncRNA downstream 101220 28944973 ~ 28945203 (-) True G693657
TU789628 lncRNA downstream 103157 28943031 ~ 28943266 (-) True G693654
TU789627 lncRNA downstream 103420 28942260 ~ 28943003 (-) True G693653
TU789626 lncRNA downstream 104308 28941862 ~ 28942115 (-) True G693652
TU789740 lncRNA upstream 3730 29099765 ~ 29099978 (-) True G693765
TU789752 lncRNA upstream 10967 29107002 ~ 29107320 (-) True G693777
TU789776 lncRNA upstream 27062 29123097 ~ 29123331 (-) True G693800
TU789791 lncRNA upstream 40839 29136874 ~ 29137074 (-) True G693815
TU789792 lncRNA upstream 41213 29137248 ~ 29137451 (-) True G693816
NM_001165131.2 mRNA downstream 16707 29025283 ~ 29029716 (-) True lcb2
XM_036985241.1 mRNA downstream 41263 28990257 ~ 29005160 (-) True LOC110529757
XM_021612235.2 mRNA downstream 186312 28850874 ~ 28860111 (-) True ahsa1a
XM_021612234.2 mRNA downstream 186951 28850874 ~ 28859472 (-) False ahsa1a
XM_021612230.2 mRNA downstream 201596 28822703 ~ 28844827 (-) True LOC110529750
XM_036986864.1 mRNA upstream 106351 29202386 ~ 29203480 (-) True LOC118965622
XM_036986865.1 mRNA upstream 108115 29204150 ~ 29208928 (-) True LOC118965623
XM_036986844.1 mRNA upstream 116117 29212152 ~ 29213579 (-) True LOC118965608
XM_036986866.1 mRNA upstream 117752 29213787 ~ 29223764 (-) True LOC118965624
XM_021612264.2 mRNA upstream 364955 29460990 ~ 29465444 (-) False LOC110529760
TU789639 other downstream 87591 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 451992 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 564525 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 930375 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 1730488 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 905728 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 942553 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 1750867 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 1759072 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 2381319 31477354 ~ 31478027 (-) True G696499

Expression Profile