RNA id: XM_036985241.1


Basic Information

Item Value
RNA id XM_036985241.1
length 4908
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110529757
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28990257 ~ 29005160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGCATATAGTTTATCCTGTTTATATAAAAGTACACACGCAGCAAAGAGCGGTAGGGAGAGAGTGGACACACAAGCCGATCTCTGAAATATATTCATATAGTTAAATAGGTGAATAACTGGGGCCAATATCGGCATGTAAAACTGTATCTGTTACTGGAGAGTGACGCCTCTTGCCGTGAAGTTTGCATTGACGCACCATATTTTTACATGAAGGGTAGTGTGAAAGTAGACCTATGATCAGCGCCTTTGCTCAGGGGGAATGTTTTCTTGACGTGTGACACCTAATGTGCCTAATGGTGTTGGCTCCCTGGTAATCCATTTAATCCAGTCTACAAAGTCACTTATCTCCTCTCCCATTATGCGCGTGCCAATTATCAGTCGTTTCTGTGTCCCGGTCACATCTCCAAagggctctctccctctctatttggATAACTAGATCCGCGAGACACCCCCTCTTAAGCATCACCCCTCTCTTCAACAGTGTGGAAGGTGTGAAGACGTGCGTATCCGAACCAGTGCGACTCAGACACTGATTGATTTGGACAAACCTGCGTTGTAGATAATCGACTGACTTCAATTGGATAATGGATTAACGCGTCAGAGATAACGCAAACAGGCTATTCTCAACTCCAGATGTCAATGTATTGGAAGAAAACACTCACCCATCCATAAGGAAGTGTACCCAACTATTTTAACCTAGTTGAATAAACCGTTCACCGGTGCGCACTGAGAGAGtgcgtggttgtgtgtgtgtcttttgtaCTTATAGCCCAAGTTGGTCTGGTTAAATGGGGAGGCTTGAAGAACCTAGACATTGACCTAGACGCAACatataggcaggcaggcaggcagacagtgaAAGGAGAAATCAGTCGCTTTGAGAGTCTGAGTGGTCAGAGTTGCGTCGAAGTGCGGCAGAGGGATATGGATTGTGCGTCGAATGCCATCGGACATCAGCGCGCATCTCTATCAAGAGGAAGACTCTAAAGCTGTTGCTGCTGGTCGAATAGGTGACCTGCTCGTAAGGAAACAAGTTCTGGAAAAGAGAAGCTCGGATGAGGACAGAAAACAACGTTTCTCTCGCTACGTAAAGAATATACAAGTTAGGGATAGATTGGGGACTTCAAATTACTTGTTAGTTGTCACTTCAATGGAGAAAATGATTCAAGTCGGAGGGAGATGTCTGACAATATTGATGATCTTTTTAGTACTTTTCGTTGGATTGGTGATGGGCTTTCCCACCAAACAGCACAACGGCGTGTCTTTGGAGGCTCGTGCTCAGTCGCCCGCCAGTGGGGTCCATCGTGGACCGGAGGCCCTGGAGCAGCAGAACCAGGTCCAGAGCCTCCTCCCCCCTGACACGGAGCACCGCCACAAGAGGAGGTGGTCTCACTCTCAGCATCGCTCCGTAGGGGTTCTGCCCCAGCCTGAGCCGGAGGAGGAGATGAAACCCTTCGTTCTGGACCTCAAGAACTTCCCCGAGCTCGCCAATGCAGATATCAGCTCTCAGAACCCCAACATCCAGGTGACCATTGAGGTGGTGGATGACCCTAACATAGAAGTGGAGATGGATCTGGTAACGGACAAGGACTggatccctccttcctccccttccACTGTAGACTGGCTGGGCGGTAAGAAGCTGTTCTGGCCCCTGTTCTGGGGCTACACAGATGCTGACTCCAGTGAGGATGGAACTGGCCGCTCAGGGCTGGAGgagactgaagaggaggaggaggacgattACCTGTTGGAGTATGGTAGTGAGGAGCCCCTCCCAAGTGGAGTGGGGGGAGACTGGGACAGTCGCTGGAACGAGGGTTGGGACGCCACTCATAGCTACTATGAGGAGGGGACGGAGGAGTGGAGTGCCTGGTCTCTGTGCTCAGTCACCTGTGGtcatggagagaggaagagaacacGGTCCTGTGGTTACAGCTGCACCCTGACAGAGGCCACCAAATGTGACATGGAGCCTTGTCCAGACGCTGTCAACACAGTGGCTGAACCTTTCCCCTTCGAGATGGAGAACGGCACTGAACCGTTTGGCACAGatGTGGACACATGTGAGAAGTGGCTGAACTGTAAGAGCGACTTCCTCCAGAGATACCTCAACCAGGTCCTTTCAGAACTACCCAGCTGCCCCTGTGCCTACCCCTCGGCCGCCGCCTACACCGTGGTCAGCGCTTTCGACGAGGGACACGACCGGACCTTCCGTTGGCATGACGCCAGTGGCCCTAAAGAACGCCTGGACATCTACAAACCCTCTGCGAGGACTTGCATCCGCTCTGCCCTCTCCAGCGATGTCGCTACGCTCGGCGCCCAGCACTGTTGCTACGACGACCGTGGCTGTCTGATCACACGGGGTAAGGGTGCAGGAACGCCCAACCTGATCAGCACGGATTTCTCCCCGGAGCTCCACTTCAAGGTGGACGTGCTTCCCTGGATCCTGTGTAAAGGGGACTGGAGCCGCTTCCACGCGGTGCGGCCGCCCAACAACGGCCTGGTCTGCCCGGAGAACCCCCACCATGACGTGTTCATGAACGAGCTGGAGGAGGCCCGGGAatactgagaacacacacagcaGCCAAAACTACACTAACCAGAATTCACCCGTACAGTGGGGCCCAATCCTAACTTGAGAAGGGAGCGCTTGTAGGACTGTTTTGCATAGCTTTTTGCATTTTGCATATAAGGAGGTATGGCGGTTGCAAGGTTGAGGTGCAAGTTGATTTCAAGTTAGGATTTGGCACATTAAACACCCTGTGACCAGACCCAACAGAACAGAACTGAACTTCATTGAACTGAACAACAACTAAAAAAGACGCAGTCCTGTCAATGCTTGCCGACGTGTTTCGCATCCAGCATGGTACcaagctctctgtctctctctctcgctgtctgtccaTGACATTGTCGTCTAGCCTGTTGGTGGCTTGTTGTAGGTGTTGTGGCTCTGTGTGACTGACAAAGGCAACATAAACATCCCAAATGTACTTCCTGATTTGATTTTGCTGTGTGAGATGTTTGATACTGTAGTAAGTCTTGTTTTGAAAAGGGGATTGTGGAATGTGTCATGCCCAACACATGAATATAGTCATAACTATGCTGCTATGAGAAGATGAAGTTAAATAGGTACTGGAGGGGGATATATGATTCAACAAACATGAATTTGCTGAAAGGTTATTCTTAAAAAATATAATCTAAAGCTGAGGAGAGAATTTGGTCTAAAGAAAGAAGTTTACAAGCACGAACAACCACACCCAGCACCTCATGCTCATTCTTGATAACATGCCAACAGAACAACTTCTTAGAAGCTTGGAGGTGGAGACAGTCTTCTGGTCTGGACTGAACTTCTCATCCTCTGAAGCTTGGAGGTGGAGACAGTCTTCTGGTCTGGACTGAACTTCTCGTCCTCTGTTTCAACATTGACAGTTTGAGAACCTTCAATCATGGATGTTTCTACAGTTTTCTCAGGGGGACTCATATTGTTAGAGATTATAGCCCATATGTACCTCAACAGTGGAGCAGCAttgggaaccactacttcagAGTGCACTTCAGAGTGCACTTCGGACTGTACTTCAGAGCGCACATTAAAGATGAGAATGGTACCTGTTACGGAAACGAAAAAGTTGGATCTACAGTGTAAATGGATGAAGAGCGGATAAATACAGTATTAATTCAGATAAAGTTATGAAATGATGCTCTTTGTGCGGTTTTTGGCAAGCCATTTTTTCTGTCAATGTAATTAAAGTTGAATAGCTGTTCTATTCCATTGCGATATGTTGCATTGTTTTTGCAAAGACTTCATAGGAGTGGGAACTGTTGGCTTGAAGTCTTAACATTTATGCTCCAAACCTCTTTCAGgaattcagttttttttttaatgtgtgCAAACATGCATTACATTTTGAAAtcacatgttgttgtttttttaaaggaAGGCACTTTATttaaggtatatatatatatatatatatatatatatatacaaacgaTGGCATGTATGAAAATCAAATGTTTatatgttataatgttataattgTGAAAGGGTAACTTGCCAGAAATGCTGCATTGTTCATTTGTAAAGTATATTATCATGTGAGTTTCTGTTTTAAAAGCATGGTTGATATTTTGTGATTTCTTAAACTAGTATAACTATACTcatagaaaaaaggtgctatctagaacctaaaagggttcttcggctgtccccttaGGAGAACTCTCAGAACAACCCTTGTtcgttccaggtagaatccttttggtTCCAAGTTGAACGGttttgggttccatatagaaccttttcaacagagggttctacgtggaacccaaaatggttctacctggaacaaaaaaagggttttacctggagccaaaaagggttgtcctatggggacagctgaagaacccttttgtaaCCCTTTTGTCTAAGAGTGTACCATATTGTCTTGTACAGTATTTATTGTCCGTTTTTTTAAGTCTGCTAAAGCTTTGAAATGACTCTACTAAAACCCACATGGTGCGCTACTAGGAATGCAAAATTCACAACATTCACTTTCCCAAAATACCCAGGTAAAGAAAATCCTGGCTGGAATATTTGTGGAATCAGCAGGGCATAACCTGCGAGGGAATCATCCAACCTGGAGTTCTtcaactgggatttctggaaaactccTGGAATTGTTTCGGGAAAGGTTCTGGAATCTTTAAAACCTACTTCGGACTGAGACACTCTGACTCCACGGTGACGTCAGAAGGGAAACGACCTGCCTCACATGATATGACCACTCCAACAGCAACTCCATCAAGTGTCTGTATCGTTTTATCATTTTATTGTACTTCTGTGCTATGAAAATATgttgtgacaaatacaatgaGGAATATAAAGACGTTTG

Function

GO: NA

KEGG:

id description
K24435 ISM; isthmin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU789631 lncRNA downstream 45054 28944973 ~ 28945203 (-) True G693657
TU789628 lncRNA downstream 46991 28943031 ~ 28943266 (-) True G693654
TU789627 lncRNA downstream 47254 28942260 ~ 28943003 (-) True G693653
TU789626 lncRNA downstream 48142 28941862 ~ 28942115 (-) True G693652
TU789453 lncRNA downstream 103503 28886434 ~ 28886754 (-) True G693530
TU789678 lncRNA upstream 35382 29040542 ~ 29041222 (-) True G693703
TU789682 lncRNA upstream 42002 29047162 ~ 29047535 (-) False LOC110529223
TU789683 lncRNA upstream 44381 29049541 ~ 29049900 (-) False LOC110529223
TU789681 lncRNA upstream 44982 29050142 ~ 29050815 (-) True LOC110529223
TU789685 lncRNA upstream 50739 29055899 ~ 29056171 (-) True G693710
XM_021612235.2 mRNA downstream 130146 28850874 ~ 28860111 (-) True ahsa1a
XM_021612234.2 mRNA downstream 130785 28850874 ~ 28859472 (-) False ahsa1a
XM_021612230.2 mRNA downstream 145430 28822703 ~ 28844827 (-) True LOC110529750
XM_021612229.2 mRNA downstream 145431 28822703 ~ 28844826 (-) False LOC110529750
XM_021611343.2 mRNA downstream 185900 28776437 ~ 28804357 (-) True si:dkey-177p2.18
NM_001165131.2 mRNA upstream 20123 29025283 ~ 29029716 (-) True lcb2
LOC110529223 mRNA upstream 41263 29046423 ~ 29096035 (-) False LOC110529223
XM_036986864.1 mRNA upstream 197226 29202386 ~ 29203480 (-) True LOC118965622
XM_036986865.1 mRNA upstream 198990 29204150 ~ 29208928 (-) True LOC118965623
XM_036986844.1 mRNA upstream 206992 29212152 ~ 29213579 (-) True LOC118965608
TU789639 other downstream 31425 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 395826 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 508359 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 874209 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 1674322 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 996603 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 1033428 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 1841742 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 1849947 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 2472194 31477354 ~ 31478027 (-) True G696499

Expression Profile