LOC110530970 (LOC106569164)


Basic Information

Item Value
gene id LOC110530970
gene name LOC106569164
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69114482 ~ 69240965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986062.1
GTCTGTTTCCACACTGTATTCCTCGCAGGAGTGAAACAAAAGCCGCCGAGAGCCTACTTTTTGGAGTCTTCCTGAAGGGGAGAAAATGATTGCACGTTTCCTTGGTGACTGATCTCCACGAACAACAGATTTCAACCTGTGGATACTGCGTGGCGTGCGCCAGTTTCCAGCCATAGGGATTCGGGACGCTCTCCCCTCTAGCCGGCTGCGTGCTTGATTGTTTCCCGGCGTCGGTCTGTGGCGCGCTGTGTGGTCCAGTGTCTCGTTTATGAATGGCCCTGACATGGAGGAAATTCCGTTTCAGAAAGTCAAAACCCGGCGGAAGAAAAGCCACTGTCCACCCGGCGTCCCTCTGACTACCATTGCATGCGAAGACGAGTTCGACTGTAAGGAGCTGGAGTCTCTGTTCCAGAACTACAACCTAAAGCTGGAGCAGACGTCCACTCTCAAAGCCCTGGCGGTGCTCATCATCATGGCATCGACGCTGGCGGTGGTGGAGTTGCTTTCCGGGCCCAATCTGACCATCCCCAAGGGGTCCCATCCTGTCCACTGTATCGTCTTCGTATCCCTCTTCATTGTCACCAACGTCAAATACCTACAGGTTACCCAGCTCCAGCAGATCGTCAACCTGACCTTGCTCTTCGCCTTCACCTTCTCGTTCCTCTGCTGTCCCTTCTCTCTCGGAGCCGTGGGGCTGGAGCCCCCGACCAACCCGGAGCAGGGCATGTGGCAGCTCATGCTGGTTACATTCGTCGCCTACTCACTCTTGCCCGTGCGGACTCTGTTAGCAGTAGTGTTTGGAATAATGATTGCCATCTCTCATGTAATTGTGACAGCGACCTCGGTGACAGTCAAGACGCAGAAATTATGGAGAACGCTGGTGGCCAACACAGTGCTGTTTACCAGTGTGAACCTGTCTGGATTGTTTGTGCGCATCCTGACTGAGCGAGCCCAAAGGAAGGCTTTCCTACAGGCACGCAACTGCATCGAGGAGAGGCTACGCATGGAGGACGAGAAtgagaaacaggagcgcCTTCTGATGAGTTTGTTGCCAAGGAACGTGGCAATGGAGATGAAAGAAGATTTCCTGAAGCCTCCTGAAAGGATCTTCCACAAGATCTACATCCAACGCCATGACAACGTCAGTATCCTGTTTGCTGATATCGTGGGGTTCACCAGTCTGGCGTCCCAGTGTACAGCCCAGGAACTGGTCAAACTACTCAACGAGCTCTTTGGGAAGTTTGATGAGCTGGCCACAGAGAACCACTGTAGGCGTATAAAGATCCTGGGAGACTGTTACTACTGTGTGTCAGGTCTGACACAGCCCAAGACTGACCACGCTCACTGCTGCGTggagatgggcctggacatgatCGACACCATCACGTCGGTAGCGGAGGCCACCGAGGTGAATCTGAACATGCGTGTGGGTCTCCACACGGGCCGGGTGCTGTGTGGGGTCCTGGGACTGAGGAAGTGGCAGTATGACGTGTGGTCCAACGATGTCACACTGGCCAACGTGATGGAGGCAGGGGGACTGCCTGGGAAGGTCCACATCACCAAGGCGACCCTGGACTCCCTGAATGGAGACTATGAGGTTGAACCAGGCAACGGTCATGAGAGAAATGCCTTCCTCCTCAAACACCAGATCGAGACCTTCTTCATTGTGCCAACTCACCGACGgaagATATTCCCAGGATTGATTCTTTCGGATATAAAACCTGCCAAAAAGATGAAGTTTAAGACGGTGTGCTACTTGCTGGTGCAGCTCATGCACTGTAGGAAGATGTTCAAGGCCGAGATACCTTTCTCAAACGCCATGAACTGTGAGGATGGTGACAAGCGGAGGGCCCTGCGGACGGCTCCAGATAAACTGCGGAACCGGACTTCGGTGTCAGCTAACGTGAGCCAGGCCAGCCCGGGCACACGGGTCAACCGCTACATTGGTCGTCTGATCGAGGCGAGGCAGACAGAGTCGGACACAGCTGACCTCAACTTCCTTACACTCATGTACAAGTGCTCTGAGCGCGAGCAGAGGTACCACCAGCTACATGATGAGTACTTCTCCAGCGCTGTTGTCCTCTCTCTAATCCTAGCTGCCTTGTTCGGCCTTGTCTACTTTCTCATCATCCCACAGGGAACAGTGGTTCTGGTCCTACTGGTCACCTGCATCTGTTTCCTAGTAGTTTGTATCATGTACCTGCATGTCACTAAATTACAGtgttttCCAGGGTGCCTCACTATTCAGATCCgtactgttctgtgtgttctcaTAGTGCTCTTAATCTATGCTGTAGCCCAGGCCTGTGTGGTGGGCTGCATGCCGTGGCTGTGGGGTAGTCCTCACCACTCCAACAGCTCCATTGTCAACATGGATACAGCAGGCCCGCTACGCAGCTTCAACCGTACTTTGATGGAGCTGCCATGTGACGGTGCCCGCTACGCTTTCTTGTCATGCGTTGTGGGCACGCTGACACTGGCGCTCTTCCTGCGCGTATCCTGGATGCCAAAGATGGCACTGTTGCTCCTCCTGGGGGTGCTGTATGTCACTGTGCTGGAGCTCAGCGGATTCAGACGCACCGCGAGTGGGGGGTCTAATCTCCAGATCCGGGGATATGAGCCCATCCTATCCCTGCTGCTGTTCACCAGTGCCCTGGCCCTCCACTCCAGACAACTGGACCTCAAACTACGACTGGATTTTCTTTGGGCcacacaggcagaggaggagagggatggcaTGGAGAAGGTCAAGCTGGACAACAGGCGGATTCTTTTCAACCTGCTTCCTGCTCACGTGGCTCAACACTTCCTCCTGTCCAACCCCAGAAACATGGATCTGTATTACCAGTCCTATGCCCAAGTCGGAGTGCTGTTTGCTTCCATCCCCAACTTCAATGACTTCTACATTGAGCTGGATGGGAACAACATGGGAGTAGAGTGTCTGAGACTACTCAATGAAATCATCGCTGATTTTGACGAGCTCATGGATAAAGATTGCTATAAGGACATTGAGAAGATCAAAACCATTGGCAGCACGTATATGGCAGCTGTGGGTCTAGTCCCCACCATCGGAACaaagGACAAAAGATCTGTCTATGATCACCTGAGCACAGTTGCAGACTATGCTATTGAGATGTTTGATGTGCTGGATGAAATCAACTACCAGTCATACAACGACTTTGTCTTGAGAGTGGGTATCAATGTGGGTCCGGTGGTGGCGGGGGTGATCGGGGCCAGGAGACCTCAGTATGATATCTGGGGGAACACAGTGAACGTGGCCAGTCGCATGGACAGCACCGGAGTCCCTGGCAAGATACAGGTAACAGAGGATGTGTACCGTATCCTGGGGGATAACTACGACCTGGTGTGCCGGGGGAAGGTTAGCGTGAAGGGTAAGGGTGAGATGCTCACCTATTTCCTGGAGGGCAAGGTCCACAGCGCGGGCTGCGCCACCACCTCCTCCGTGGTGCGCTCTGCCAGCCTGAACCGCCGTGCCCACTCCTGCGGCAAGGCCAGCGTTCCCACCAAACTGGGCAGTGTCAACTCTGTCGCCAGCTTCACAGTTCGCGCCAGCATGGTTAGCCTCGGTGGCACGGGTAACAGCAGCTCTAGCCCCAGTGTCAATGTCAGTATCCACCCCATGCCATGCTTGCCCTCACCCTGTGTGCCCACActgggagaggaggatgaagaagaggagacaGATGTAGATGTGGGAGGAGTGGTGGTGGAACGGGTGAAAGAATTGGCTGTGTAGGGAGGTGGAAAGAAGAAGTGCCGCACTGTTGTAAACTTGAGTTCCAGACCTCCCCGTCCTGGGCTATCACATCCGTCAGGAGTCACTGGGGGTACCACTAAAGATTGAACCAGGGTCTCCTGTGGGTAAATGGTACACTGGGATACTGGGACAGCCCACTGCACAATGGCGGGATGCTCCTCGAGGAGTTACCTGTCTCTGAGGATGGTcagtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacg
>TU840732
GCTGCACGATAAAATCACGCAGACTTGATTGAGTTTGTTGTTACATAAATAGTGACTTGCCACTGTTTGCAACCAAACACAATCAACTGAAGATTTCCGGCTACCAGCATTGGAACATCAGGCTCCTGGTGACATGACCAGAAGTATGAGTGAGTGTGGCAGCCAGGTGATAGTGTgttgtccctctgtgtgtgtacaCTCCCAACAGGGGGACATGCACAAAACACAGCCCAGTATTATCAACCTAAAAAGACAGAACTTTTTATGTCTTCTTCTCTGATTATGCCAAGGATTCATTCCATCCTTCAAGGTGTAGTAGGCTAGTTTTCGTGTACTGTAAATACggtatgcatgcatgtgtgtattcATACACAAGTATttatatgtgtgtatgcatgtgggtGTTCGACCTTAAATCTTAAATGAAATAGCACAAATACACATTTTTATACATTCAAAAAGTCTCAAAAGGCTTTTGACACAACGTCTTTAGTAGTGCATGACCTGTTAGTGCTGGTCTGGACTAGTCTGGTTTCCTGTCGAGTGTAAACCAAAGCAATGAGCTCCTCTAACATCCTGTTGTTTAGTACTTCGTCCTTCACAAAAGGAGCACTACTGCCGTCTAGGTTTCTGGCTTTTTAGAGCAAGTCATGGTCAGGGGGGGGTCAAACACTCAATAGTCAAGATATATGGTTTACTGCATATGACATATTTTAAGTCTCATGGATCCAAACAAATAATCATGGCTGTTTGGTAAGACTGTTTAGAACCAGTGTTACATTTCTAATGTAGGGAACcaggtgcaacacacacacagtcagacataGCTTTGTTTGCATCCATGAACTTGTCGAGTTGTGTATTGATCAAGGCTTGTTATTCGTCCATTGCTCTGCCCTGATAGGGATtatgtgtgggggtgtgtgtcctGTGTCGGCTATACACGCAGCAGGCTGTAGCCAAGGCTTTGAAGGGACAGGGAGGTCGGTAAAATAGGCATTGGGTAAGGTGCGTTGGCTTTGACCCACAGTGCGATGCCCTCATCCTTGAGTCCCCGATGTAGGCTATAGAACTTTAGTTAATGCCAAACCTGGAACAGTCTCTCTTACGCACAACCACCAACACATACGTATGTATGCTCGCTCCTTCACACATtctttgtgacacacacacacacacacgcacacacgcacacacgtacacacgtacacatgtacacacgtacacatacacacacacacacacacacacacacacagagaaaacagtATTCTGCAAATACGTACAGACTTAGCAACATCTGTGGCAGCTGTAGAATCACAGTGTTTCCAACTCCCATGCTGTAGACTATGACCATTAGTTAGAGAGATGAAGACTTTCCCTTGATCTGCAAAAATGTAAATACATCAAGTTTCAAGTATTTTGCCTTACTTCTATAAATGCTTACAGTGATTGAAAAATGCCTTTTTAGCGCATCACTTTGACACGCAGAACTTTGTAAATAAATGACTACTACAGCTGTAAACAACGTTGTATCTTGTACAGTGTAAAGTTGGGTTATCTCAGATTTTGTAATAAACACACTTTATTGATgtaaaaaaaaaa
>TU840728
tacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgattgattgattgacaactGGACAATCACGCCTAGGATGGCTGCACGATAAAATCACGCAGACTTGATTGAGTTTGTTGTTACATAAATAGTGACTTGCCACTGTTTGCAACCAAACACAATCAACTGAAGATTTCCGGCTACCAGCATTGGAACATCAGGCTCCTGGTGACATGACCAGAAGTATGAGTGAGTGTGGCAGCCAGGTGATAGTGTgttgtccctctgtgtgtgtacaCTCCCAACAGGGGGACATGCACAAAACACAGCCCAGTATTATCAACCTAAAAAGACAGAACTTTTTATGTCTTCTTCTCTGATTATGCCAAGGATTCATTCCATCCTTCAAGGTGTAGTAGGCTAGTTTTCGTGTACTGTAAATACggtatgcatgcatgtgtgtattcATACACAAGTATttatatgtgtgtatgcatgtgggtGTTCGACCTTAAATCTTAAATGAAATAGCACAAATACACATTTTTATACATTCAAAAAGTCTCAAAAGGCTTTTGACACAACGTCTTTAGTAGTGCATGACCTGTTAGTGCTGGTCTGGACTAGTCTGGTTTCCTGTCGAGTGTAAACCAAAGCAATGAGCTCCTCTAACATCCTGTTGTTTAGTACTTCGTCCTTCACAAAAGGAGCACTACTGCCGTCTAGGTTTCTGGCTTTTTAGAGCAAGTCATGGTCAGGGGGGGGTCAAACACTCAATAGTCAAGATATATGGTTTACTGCATATGACATATTTTAAGTCTCATGGATCCAAACAAATAATCATGGCTGTTTGGTAAGACTGTTTAGAACCAGAATGGTCTGGTTTTACATAAGGGTAAGTCACTTAGTGTTACATTTCTAATGTAGGGAACcaggtgcaacacacacacagtcagacataGCTTTGTTTGCATCCATGAACTTGTCGAGTTGTGTATTGATCAAGGCTTGTTATTCGTCCATTGCTCTGCCCTGATAGGGATtatgtgtgggggtgtgtgtcctGTGTCGGCTATACACGCAGCAGGCTGTAGCCAAGGCTTTGAAGGGACAGGGAGGTCGGTAAAATAGGCATTGGGTAAGGTGCGTTGGCTTTGACCCACAGTGCGATGCCCTCATCCTTGAGTCCCCGATGTAGGCTATAGAACTTTAGTTAATGCCAAACCTGGAACAGTCTCTCTTACGCACAACCACCAACACATACGTATGTATGCTCGCTCCTTCACACATtctttgtgacacacacacacacacacgcacacacgcacacacgtacacacgtacacatgtacacacgtacacatacacacagagaaaacagtATTCTGCAAATACGTACAGACTTAGCAACATCTGTGGCAGCTGTAGAATCACAGTGTTTCCAACTCCCATGCTGTAGACTATGACCATTAGTTAGAGAGATGAAGACTTTCCCTTGATCTGCAAAAATGTAAATACATCAAGTTTCAAGTATTTTGCCTTACTTCTATAAATGCTTACAGTGATTGAAAAATGCCTTTTTAGCGCATCACTTTGACACGCAGAACTTTGTAAATAAATGACTACTACAGCTGTAAACAACGTTGTATCTTGTACAGTGTAAAGTTGGGTTATCTCAGATTTTGTAATAAACACACTTTATTGATGTACAAAATA
>TU840730
ACTTACACATacacacacacacacacacacagagaaaacagtATTCTGCAAATACGTACAGACTTAGCAACATCTGTGGCAGCTGTAGAATCACAGTGTTTCCAACTCCCATGCTGTAGACTATGACCATTAGTTAGAGAGATGAAGACTTTCCCTTGATCTGCAAAAATGTAAATACATCAAGTTTCAAGTATTTTGCCTTACTTCTATAAATGCTTACAGTGATTGAAAAATGCCTTTTTAGCGCATCACTTTGACACGCAGAACTTTGTAAATAAATGACTACTACAGCTGTAAACAACGTTGTATCTTGTACAGTGTAAAGTTGGGTTATCTCAGATTTTGTAATAAACACACTTTATTGATGTACAAAATA
>TU840733
tacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgattgattgattgacaactGGACAATCACGCCTAGGATGGCTGCACGATAAAATCACGCAGACTTGATTGAGTTTGTTGTTACATAAATAGTGACTTGCCACTGTTTGCAACCAAACACAATCAACTGAAGATTTCCGGCTACCAGCATTGGAACATCAGGCTCCTGGTGACATGACCAGAAGTATGAGTGAGTGTGGCAGCCAGGTGATAGTGTgttgtccctctgtgtgtgtacaCTCCCAACAGGGGGACATGCACAAAACACAGCCCAGTATTATCAACCTAAAAAGACAGAACTTTTTATGTCTTCTTCTCTGATTATGCCAAGGATTCATTCCATCCTTCAAGGTGTAGTAGGCTAGTTTTCGTGTACTGTAAATACggtatgcatgcatgtgtgtattcATACACAAGTATttatatgtgtgtatgcatgtgggtGTTCGACCTTAAATCTTAAATGAAATAGCACAAATACACATTTTTATACATTCAAAAAGTCTCAAAAGGCTTTTGACACAACGTCTTTAGTAGTGCATGACCTGTTAGTGCTGGTCTGGACTAGTCTGGTTTCCTGTCGAGTGTAAACCAAAGCAATGAGCTCCTCTAACATCCTGTTGTTTAGTACTTCGTCCTTCACAAAAGGAGCACTACTGCCGTCTAGGTTTCTGGCTTTTTAGAGCAAGTCATGGTCAGGGGGGGGTCAAACACTCAATAGTCAAGATATATGGTTTACTGCATATGACATATTTTAAGTCTCATGGATCCAAACAAATAATCATGGCTGTTTGGTAAGACTGTTTAGAACCAGAATGGTCTGGTTTTACATAAGGGTAAGTCACTTAGTGTTACATTTCTAATGTAGGGAACcaggtgcaacacacacacagtcagacataGCTTTGTTTGCATCCATGAACTTGTCGAGTTGTGTATTGATCAAGGCTTGTTATTCGTCCATTGCTCTGCCCTGATAGGGATtatgtgtgggggtgtgtgtcctGTGTCGGCTATACACGCAGCAGGCTGTAGCCAAGGCTTTGAAGGGACAGGGAGGTCGGTAAAATAGGCATTGGGTAAGGTGCGTTGGCTTTGACCCACAGTGCGATGCCCTCATCCTTGAGTCCCCGATGTAGGCTATAGAACTTTAGTTAATGCCAAACCTGGAACAGTCTCTCTTACGCACAACCACCAACACATACGTATGTATGCTCGCTCCTTCACACATtctttgtgacacacacacacacacacagagaaaacagtATTCTGCAAATACGTACAGACTTAGCAACATCTGTGGCAGCTGTAGAATCACAGTGTTTCCAACTCCCATGCTGTAGACTATGACCATTAGTTAGAGAGATGAAGACTTTCCCTTGATCTGCAAAAATGTAAATACATCAAGTTTCAAGTATTTTGCCTTACTTCTATAAATGCTTACAGTGATTGAAAAATGCCTTTTTAGCGCATCACTTTGACACGCAGAACTTTGTAAATAAATGACTACTACAGCTGTAAACAACGTTGTATCTTGTACAGTGTAAAGTTGGGTTATCTCAGATTTTGTAATAAACACACTTTATTGATGTACAAAATA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0016199 axon midline choice point recognition biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986062.1 False 4051 mRNA 0.54 19 69183167 69232994
TU840732 False 1605 lncRNA 0.42 3 69114482 69183105
TU840728 False 1708 lncRNA 0.41 2 69181468 69183197
TU840730 False 376 lncRNA 0.35 2 69181468 69240965
TU840733 True 1654 lncRNA 0.41 2 69181468 69183197

Neighbor

gene id symbol gene type direction distance location
igfbp1 igfbp1 coding downstream 25608 69150343 ~ 69157726 (-)
LOC110530426 LOC106569167 coding downstream 187907 68908995 ~ 68995260 (-)
LOC110530425 tbb2a coding downstream 274979 68901719 ~ 68908188 (-)
LOC110530423 LOC106569170 coding downstream 327133 68834340 ~ 68856034 (-)
LOC110530422 LOC106569171 coding downstream 536421 68542258 ~ 68646746 (-)
si:ch73-40a17.3 mep1b coding upstream 201548 69434542 ~ 69450423 (-)
LOC118965618 rnf138 coding upstream 228926 69461920 ~ 69474389 (-)
LOC110530436 rnf138 coding upstream 244312 69477306 ~ 69487134 (-)
LOC110530438 ripk1 coding upstream 304174 69537168 ~ 69553690 (-)
LOC110530443 LOC106569150 coding upstream 823509 70056503 ~ 70095135 (-)
G740468 NA non-coding downstream 33354 69146733 ~ 69149813 (-)
G740478 NA non-coding downstream 113974 69068630 ~ 69069193 (-)
G740448 LOC106599719 non-coding downstream 158295 69024018 ~ 69024872 (-)
G740438 NA non-coding downstream 176560 69006333 ~ 69006607 (-)
G740437 NA non-coding downstream 176936 69006005 ~ 69006231 (-)
G740604 NA non-coding upstream 17905 69250899 ~ 69263627 (-)
G740684 LOC106569160 non-coding upstream 122920 69355914 ~ 69357999 (-)
G740685 NA non-coding upstream 126388 69359382 ~ 69359622 (-)
G740689 NA non-coding upstream 132173 69365167 ~ 69365498 (-)
G740691 NA non-coding upstream 134401 69367395 ~ 69367614 (-)
G738504 LOC106569192 other downstream 1757828 67423863 ~ 67425339 (-)
G738502 LOC106569192 other downstream 1762111 67420739 ~ 67421056 (-)
G738472 LOC106569192 other downstream 1801190 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 2468671 66713693 ~ 66714496 (-)
G740718 LOC106569160 other upstream 175974 69408968 ~ 69430653 (-)
G741077 foxc1 other upstream 492780 69725774 ~ 69727431 (-)
G741177 NA other upstream 549295 69782289 ~ 69783294 (-)
LOC110530971 NA other upstream 918813 70148848 ~ 70160838 (-)
LOC110530449 NA other upstream 965917 70198887 ~ 70200278 (-)
LOC110530421 LOC106569173 coding downstream 803445 68303741 ~ 68311037 (-)
G740436 NA non-coding downstream 108492 69005773 ~ 69005990 (-)
G737449 LOC106569204 other downstream 2553965 66559196 ~ 66560517 (-)

Expression


Co-expression Network