LOC110530449


Basic Information

Item Value
gene id LOC110530449
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70198887 ~ 70200278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110530449
ATGTCGTCTATTACACACGTGCGTAGTTGTCATAACAAATACTATCTCCATGACCGCGCTGTCATCAACTGGCCACTTTCAGCACAGTTGAGAGGAAGAGGGGACCGACCGCAAGACCACAGACATGAGCCTTCACCTCAAGCAGACGTGTGAGGCAGCGGTGTTGACTAATATGTACCCACGCTCTCAAATATACATTTATGTCAAGATCTTGCAGTCAGACGGTGGGAACCACAGTGCGTGTGAACGCTGCCACTCGGGCACTGATCGACGCGGGTATCCCCTAACGTGTGCGCCTGCACTGCAGGCTTTGTGGACGAGACGGCGTTGGCAGACCTGTGCCATGCTGAAGAGAGTTGAGGGGGCACATCACTGGCCTTGGCATTGCTGCCCCATGGTGGGCACATCGCCCTGCTACAGATGGACGCCCGACTCCACCAGGACCACCTAGAGACACTGACGGAGGCGGCCATGACGGCCTGTAGGGCGTCAGTAAAGTGTTGGATGAGGTGATGAGATGGCATCTTCAGGAGGTGTCTGCACTGACCGGAGAGTGATGTGGTGTAGCTTGGACTTTGTGGTAGATTGGCCTATAGTGAATGGccaggggaggtggagggaggagtagaTAGAGGATTAATGTTGTCTTTTTTATTGTACACTCTTGCTCTGCTTTTGTATGAAATGCCTTTATAAACAATTACATTTAAACC
>TU842204
CATGGGCAATGTCGTCTATTACACACGTGCGTAGTTGTCGTACTCCAGTTCAAACATTCAATGATGGCAGGCCTGGAATTATTGTCCGACCAAGGATATCGTCTAGATTGAAGAAAAACTACTGAGTACACGCTGGTATGGGTTTATTTACCCAAGCTAACGGGTCTGCATACATAGAACAGGGAAATACCAAAGCGCTGGCAGTTGTGTATGGCCCTCATGAAGTACGTTTATTGCTAAACTAGCAAGATGGATATATCTAGCTAACGTTTGTTAGATAACAAATACTATCTCCATGACCGCGCTGTCATCAACTGGCCACTTTCAGCACAGTTGAGAGGAAGAGGGGACCGACCGCAAGACCACAGACATGAGCCTTCACCTCAAGCAGACGTGTGAGGCAGCGGTGTTGACTAATATGTACCCACGCTCTCAAATATACATTTATGTCAAGATCTTGCAGTCAGACGGTGGGAACCACAGTGCGTGTGAACGCTGCCACTCGGGCACTGATCGACGCGGGTATCCCCTAACGTGTGCGCCTGCACTGCAGGCTTTGTGGACGAGACGGCGTTGGCAGACCTGTGCCATGCTGAAGAGAGTTGAGGGGGCACATCACTGGCCTTGGCATTGCTGCCCCATGGTGGGCACATCGCCCTGCTACAGATGGACGCCCGACTCCACCAGGACCACCTAGAGACACTGACGGAGGCGGCCATGACGGCCTGTAGGGCGTCAGTAAAGTGTTGGATGAGGTGATGAGATGGCATCTTCAGGAGGTGTCTGCACTGACCGGAGAGTGATGTGGTGTAGCTTGGACTTTGTGGTAGATTGGCCTATAGTGAATGGccaggggaggtggagggaggagtagaTAGAGGATTAATGTTGTCTTTTTTATTGTACACTCTTGCTCTGCTTTTGTATGAAATGCC

Function

NR:

description
exosome complex component RRP41

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110530449 False 713 mRNA 0.51 3 70198887 70200270
TU842204 True 935 TUCP 0.51 2 70198911 70200278

Neighbor

gene id symbol gene type direction distance location
gpaa1 gpaa1 coding downstream 322 70186469 ~ 70198565 (-)
LOC110530448 NA coding downstream 25709 70164014 ~ 70173178 (-)
LOC110530971 NA coding downstream 38060 70148848 ~ 70160838 (-)
LOC110530443 LOC106569150 coding downstream 103752 70056503 ~ 70095135 (-)
LOC110530438 ripk1 coding downstream 645197 69537168 ~ 69553690 (-)
LOC100136597 LOC101482575 coding upstream 599 70200869 ~ 70220172 (-)
LOC110530452 LOC106569141 coding upstream 53634 70253904 ~ 70392825 (-)
LOC110530457 ccd16 coding upstream 262124 70462394 ~ 70463615 (-)
LOC110530456 LOC106569139 coding upstream 293040 70493310 ~ 70511185 (-)
LOC110530460 LOC106569135 coding upstream 331311 70531581 ~ 70536717 (-)
G741832 LOC106569144 non-coding downstream 20402 70178210 ~ 70178485 (-)
G741831 NA non-coding downstream 20717 70177966 ~ 70178170 (-)
G741830 NA non-coding downstream 21215 70177067 ~ 70177672 (-)
G741829 NA non-coding downstream 23712 70174705 ~ 70175175 (-)
G741915 NA non-coding upstream 98143 70298413 ~ 70298840 (-)
G741957 NA non-coding upstream 175370 70375640 ~ 70434861 (-)
G741981 LOC106569140 non-coding upstream 250755 70451025 ~ 70460525 (-)
G742038 NA non-coding upstream 324038 70519387 ~ 70525951 (-)
G742041 NA non-coding upstream 332871 70533141 ~ 70599981 (-)
G741177 NA other downstream 415593 69782289 ~ 69783294 (-)
G741077 foxc1 other downstream 471456 69725774 ~ 69727431 (-)
G740718 LOC106569160 other downstream 768234 69408968 ~ 69430653 (-)
igfbp1 igfbp1 other downstream 1041161 69150343 ~ 69157726 (-)
G742383 LOC106569128 other upstream 635088 70835358 ~ 70842457 (-)
G743076 NA other upstream 870364 71070634 ~ 71071082 (-)
G743421 NA other upstream 1475175 71675445 ~ 71675785 (-)
G743447 NA other upstream 1478415 71678685 ~ 71682299 (-)

Expression


Co-expression Network