XLOC_025939


Basic Information

Item Value
gene id XLOC_025939
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1011480 ~ 1028413 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052886
TCAGGCTTTTACTAATCTTTTAATGTGAAATAAGCTAGTGCAGTCTTTTTTTACtgtgcaataataaaataaataatattatatgaatataataataatataaaatatttttattaaaatgctttttttaatgtaaattttcaTCCACTTCTAGAGATTGCAGAGTGatgtataaaataatgaatgatgtACCAAATGACTGAAAACATTCTGAGTGTAGGATAAGATAAATATAACTGTGTGGCCCCTGTTTCTGTGGTATAGAAACACCACCAATGAAcagaattaaaacaaatttattctGAATTTGAGTTTATTTAACGATGCATTGGTTTCAATAAGTGTAAATGTTTCATGTGTGTAAAGAGTTATAAACTCATGATGGAGTGAAgtgatatttgttttaaaatcaagGAGAGGTTTGAATGCATTTAACTGAACATGTGTGAAATTGGTAAGGATTGACAGGCACAGCAGAACCAGAGAGTCTTCCTTTACAGTCTACACAAACTGAGAATCCCAAATAAAATCAAGACAACGTCCCTATCATGTGAAGTCTCTTTAATTATCAACAACATCCACAGAAGCACTTCTGCCAGACAAGCAGTCCAATTCTTTTCAAAAGctattttttagcatttaaaacatttagttgTTCAGTTAAGTCTGACAGTGATTCTGCTTTTGAATCATTTCTTACAGAAcaatacttttacttgagtggagatttcagtactctttccacaacTCATTATTTTAAACCAGTGGTCTCAAACTGCCACTGGTTATTTATGTCACATCCTCCTGACTGCAACTGATGTCAAAATAATAACCAGATACgccttttcaatatatatatatatacatttttaataaccaTACTGGACATTTAAGATACTGCACAATATATGCGGTTTAGTTTTCCTTTCAGTTTCTCTCAGTAGAGATTAACACACATGAGGATTATATTTGTGGCTGATTTAAACCTTGGAAATATGTCCGTAAGTGTTAAAgcaaatttttttgtaaatattgatGGGCCATTTGATTATTGTCGGGTTTATATTTTTGCACCACCTGTATgttgttgtacaaacacttcttCCTTGCTTACACACTAAACAGGTGGTGTAACAGATGTACAGATATCATTTTGCAAACATTTTTTCAGACTTGTAGATGTGTATTAAaatagggcagcatggtggctcagtggtgacgCACTGTGGCCATACAGCaaggtttgagtctcggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataggggaactgatcaactacactggacgtagtgtacaagtgtgagtgtgtgtgtgtgaatgagtgtgtatgggtgttttcccagtactggattgcagctggaaaggcatccactcaATATTTATTCCGCTGTCACGACCCCagataattaagggactaagagACTGAAAGaaaacatatgttttacattgcGGATGCCCTTtaggctgcaacccagtactgggaaacacccatacatgctcattcacatactcacacttatacactacggccaatttagttaatcaattcccctaaagcAACTAGGGAAAACCAGaaatccggaggaaacccacgccaacacggggagaatgtgcaaactccacacagaaacaccaactaaccctGCCTGGACTTAAAcctgagaccttcttgctgtgaagacacagtgctaaccactgagccaccatgcctccTCTTCTGACAGGTCATACTTGAAATATAAATGTCATGTCTATTGTCTTAAAATTCGAGGTTTTCCAAGACTCTGTGTGCGTTTATCTTTCAGTTTCCCATGTTCACAATAATAGACAGAGGAGCCTGGACTGGATGAATCAGGGATGTCGGATATAACAAGGATGAGTTTTGATTGTAACTGAGTTTGATTTGAGTAAAGCAAAAAGAGTTCATTTTAGATATAGTTAATATGCGTGTTTTTGCAAAACATTGTTTTGTGGTTGACAGCCATGTTCAACAAATTCATCAGCCCACACAAACTAGCtgctttttaataaaataaaatatatctcaTCGTATTTTTCAAGACTTTATCTTGTGCTgaagtaaattacatttttaagaatCATTAGTTGTTCTGTTCTATATATTTCTGTACTCTTTCTGAGTTACACCATTCTTCGTTTCTAAAAGCGCTAGCAGGGCTACAGACCgccattatttttaaaaacaaatgagccTGTTTGTCTGCCAGTTGCCCATTactatatagatagatagaggagCCTGGATTGGTCGGATCAGAGATGGCAGAAATAACAAGGACGAATTTGGGTGCTAATGCAGAAAAGAATGATTTAAAAGCCTTGGTGTTAAAGTTAACATCAAACATTATAGCAGGATCACGAAACCATTTTTTGACAGTTGGTACAGATACCAGGTGTTGTTCCCCTTCTGGAGCATCAAACCCGTCTGTTTTCACAAACTCCTGTAGGGCTGACAGATACGGGTCGTCATACTTCAGAGAAGTGAA

Function

GO:

id name namespace
GO:0032870 cellular response to hormone stimulus biological_process
GO:0060359 response to ammonium ion biological_process
GO:0061959 response to (R)-carnitine biological_process
GO:0006638 neutral lipid metabolic process biological_process
GO:0006639 acylglycerol metabolic process biological_process
GO:0006641 triglyceride metabolic process biological_process
GO:0033273 response to vitamin biological_process
GO:0042594 response to starvation biological_process
GO:0010243 response to organonitrogen compound biological_process
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:1901698 response to nitrogen compound biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0046460 neutral lipid biosynthetic process biological_process
GO:0046463 acylglycerol biosynthetic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052886 True 2607 lncRNA 0.37 2 1011480 1028413

Neighbor

gene id symbol gene type direction distance location
XLOC_025938 NA coding downstream 38681 972541 ~ 972799 (-)
XLOC_025937 AL929520.2 coding downstream 289355 720222 ~ 722125 (-)
XLOC_025936 NA coding downstream 322612 665115 ~ 688868 (-)
XLOC_025935 CR792453.1 coding downstream 379844 629707 ~ 631636 (-)
XLOC_025934 dicp1.1 coding downstream 426530 580351 ~ 584950 (-)
XLOC_025940 NA coding upstream 104493 1132906 ~ 1146553 (-)
XLOC_025941 NA coding upstream 135352 1163765 ~ 1164930 (-)
XLOC_025942 smdt1a coding upstream 158127 1186540 ~ 1190132 (-)
XLOC_025943 fam234b coding upstream 162957 1191370 ~ 1204341 (-)
XLOC_025944 NA coding upstream 178685 1207098 ~ 1207250 (-)
XLOC_025932 NA non-coding downstream 314113 550216 ~ 697367 (-)
XLOC_025954 NA non-coding upstream 427729 1456142 ~ 1490157 (-)
XLOC_025956 NA non-coding upstream 558421 1586834 ~ 1685178 (-)

Expression


Co-expression Network