XLOC_025932


Basic Information

Item Value
gene id XLOC_025932
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 550216 ~ 697367 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052403
CAGAATGGCTGATAGGAGTCCTCTGTTTCTGCTGCTCATCTTCTGGACACTCAGCACAGgtgtgtttggagcAGGAGAGACTCATGTGTTCAGCAGATCTGGAGAAACTGTTCATCTGCCCTGTAGAAACACTGATCAACACTGCAGCACATCAGGAACTACATGGCTCTACAACAGTGGCAGACAGACCGTTGTGCTGATTATTTTAGGAGTAAAACAGACAAACTCAGAGAGACTGAATCTGGGCTCTGACTGCTCTCTGACCATCAGTAGAGTCACAACAGGAGatgctggactttacaCCTGTCAACAGTGGAGTGGAAACCAACAACAAGGACCTGATTCACGTGTGTTTCTGCATGTTGTTGCTGAGTGCTTCTGTTGTTCAGTGCTTTCAGTTCTGCTTTCTGCTGCTGCTTTGGCTGTTTTCATCGCTGCTGTTCTGTGTTTGATCCAGCGCAGAAGAAGAGCTGCTCATCAAAGAGCGAGCGGTGAATCAGCGGTCAAAGATGAGAATCAAGTCCACTATCAAACAATCCACATGTCCATTAATCCTGCTGCCAGAGCCCATGAGCAGACGGAGGATTCAGTCACTTATTCTGAGGTCACTTGTGCTGGGAAAAAGCCGGAGAAATCAGCCAGTGATGATGATGGTAATGACTCAGTGACTTACGCCGCCGTCAGCAGAAGAGCTTAATGTgtgcagaagaagaaaaagagcctTCAGGAATAAAGATCAACACAAACAGGCAGAAATCACAGCAGCATCACTGCAGCATTTCAGGAGCACAAGTTTCCCTCAAATGCGCAGATTCAGGACTTTAGTGTGGAGAATTGGAGAGATTTAGAGCAGAACAAACACAGCTGGAATATTACTGCACTGGAAAGAGGACAAAGCAGCTGTTCTgaaggagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
>TCONS_00050809
ATGGCTGATAGGAGTCCTCTGTTTCTGCTGCTCATCTTCTGGACACTCAGCACAGgtgtgtttggagcAAAAGACACTGATGTGTTCAGCAGATATGGAGAAACTGTTCATCTGCCCTGTAGAAACACTGATCAGCactgcagaacaacagaaactgACTGGCTCTAcaacagaaacacacagacatgGACAGACACACTGATTAAGTCAGGAGTAAATGAGGTGAAGCAGACAAACTCAGAGAGACTGAATCTGGGCTCTGACTGCTCTCTGATCATCAGTAGAGTCACAAcagaagatgctggactttacaCCTGTCAACAGTGGAGTGGAAACCAACAACAAGGACCTGATTCACGTGTGTTTCTGCATGTTGTTGCTGcttcatcatcatcatcttcatctgatATTGGTCCGGGTCTCTCTCTGACTCTCTCATGTCGGCTGTTCTCATATTCTGGACTCTCCTGTGATGGTTTGTTCAGTTCTGAGGATCTTCATCTGTCCTGGGTGAATGAGGCTGGTGTTGATCTGAACACAGACTCCAGATATCAGATCTCTTCTACAGGCTGTATCATCAGTCTGTCTACAACACTCATCAGTGAAGATGAAGATAAACAGTGGAGATGTGGAGTCTATCAGAGAAATCAACTGAAGACCTCAGACACGTTTACTGTCCACTATTCAGCTCCAGATCTCACAGCTAAAGCAGAGCCAACACCACAGACTGAACCAGCAGCAGACACAACTGAAGCTGGAGCTcaaacagcagcagcagagaCTCCAGACCACAGCACAAACTGCACTTCTATAACAgCTAAAGCTGAAGCAGAGACATTCTGTGTGATTAAACAGCAGTGACTCCAGCGCTCTTCACAACACCAGCAGCAGCTTCAGCTCAGTCTACACACTCCTCTGCTCTTCTCATCTACACAGTTTTGAAAAACGGACAGATCATTTACAGGGATATGAGATTTTAAACCAGTATAATGATGGCCATCGCCAGGATTTGCTTTTAAGTAGGAAAACAGCAACATTTAGCTTGAATCATTTTCTTAAATGAGATTTCTTGTATGAATGATGAATGCCTGTATATGAATGCTTGATGAACTTCTGCTATTCTCCTGATTAGTTGTTGAACACTGAGCTGTCATGATGCAGTTTTGATGGTCTTTGACAGTGTTGTACATACATTATCATGATGGTTATTCTTGTTTTGCTGGTTGTGTTCTCCTCGCGCTTCTGTtttgattattgttcatttttaagcACAGATgatgcagtgttgccagatattgctcagagaaacaaacaaagaaatcctctgccaaaaaaaatattataataataattccaaatattgtattttgtttttattaacagcCAAATTACTCAATGCTGTCAGtaaaaaacaacatgaaatgaTGCACAGCATGAACTGCGATTACAC
>TCONS_00052405
ATGGCTGATAGGAGTCCTCTGTTTCTGCTGCTCATCTTCTGGACACTCAGCACAGgtgtgtttataGCAGGAGAGACTCGTGTGTTCAGCAGATCTGGAGAAACTGTTCATCTGCCCTGTAGAAACACTGATCAACACTGCAACACATCAGAAACTACATGGCTCAACAGCAGTTACAGACAGACAGCAGCAGTGGCAATGTTTACTTTAGGGGTGAAGCAGACAAACTCAGAGAGACTGAATCTGGGCTCTGACTGCTCTCTGATCATCAGTAGAGTCACAAcagaagatgctggactttacaCCTGTCAACAGTGGAGTGGAAACCAACAACAAGGACCTGATTCACGTGTGTTTCTGCATGTTGTTGCTGCACAAGcagaaacagcagcagcagacaCAACTGAAGCTTCTACATCTGAAGCTAAAACAACACCAGCAGTGACTCCTgaccacaacacaaacacaaCTAAaagaacagcagcagcagcagcagcagtgactCCACTTCACAACACAAAccctaaaacaaacaaacccagAGCTGCTTCACCTGCTGCAGCTAAAACAGCAGCCCTGACTCCAACAAACACAACTATACAACCAGCAGGAGCCTCAATAAcaacagTGCTTTCAGTTCTGCTTTCTGCTGCTGCTTTGGCTGTTTTCATCGCTGCTGTTCTGTGTTTGATCCAGCGCAGAAGAAGAGCTGCTCATCAAAGAGCGAGCGGTGAATCAGCGGTCAAAGATGAGAATCAAGTCCACTATCAAACAATCCACATGTCCATTAATCCTGCTGCCAGAGCCCATGAGCAGACGGAGGATTCAGTCACTTATTCTGAGGTCACTTGTGCTGGGAAAAAGCCGGAGAAATCAGCCAGTGATGATGATGGTAATGACTCAGTGACTTACGCCGCCGTCAGCAGAAGAGCTTAA
>TCONS_00052404
ATGGCTGATAGGAGTCCTCTGTTTCTGCTGCTCATCTTCTGGACACTCAGCACAGgtgtgtttataGCAGGAGAGACTCGTGTGTTCAGCAGATCTGGAGAAACTGTTCATCTGCCCTGTAGAAACACTGATCAACACTGCAACACATCAGAAACTACATGGCTCAACAGCAGTTACAGACAGACAGCAGCAGTGGCAATGTTTACTTTAGGGGTGAAGCAGACAAACTCAGAGAGACTGAATCTGGGCTCTGACTGCTCTCTGATCATCAGTAGAGTCACAAcagaagatgctggactttacaCCTGTCAACAGTGGAGTGGAAACCAACAACAAGGACCTGATTCACGTGTGTTTCTGCATGTTGTTGCTGGTAATTTCCTGCTCATAACATCAGACACTTTAACACTCACATTAACATCACTGAACCACACTAAAACAACACCAGCAGTGACTCCTgaccacaacacaaacacaacaatgaAAAAACCCATGAACAcagcagcagtgactCCACTTCACAACACAAAccctaaaacaaacaaacccagAGCTGCTTCACCTGGgctccCTAAAACAGCAGCCCTGACTCCAACAAACACAACTATACAACCAGCAGGAGCCTCAATAAcaacaacatTGCTTTCAGTTCTGCTTTCTGCTGCTGCTTTGGCTGTTTTCATCGCTGCTGTTCTGTGTTTGATCCAGCGCAGAAGAAGAGCTGCTCATCAAAGAGCGAGCGGTGAATCAGCGGTCAAAGATGAGAATCAAGTCCACTATCAAACAATCCACATGTCCATTAATCCTGCTGCCAGAGCCCATGAGCAGACGGAGGATTCAGTCACTTATTCTGAGGTCACTTGTGCTGGGAAAAAGCCGGAGAAATCAGCCAGTGATGATGATGGTAATGACTCAGTGACTTACGCCGCCGTCAGCAGAAGAGCTTAA
>TCONS_00050812
atagtgcttccgttcccctcctcggggaacgaagggttactttagtaacctcgaacggtacatgatgatgatgatgatgatgatgatgatgatgatTTCAGTTCTGCTTTCTGCTGCTGCTTTGGCTGTTTTCATCGCTGCTGTTCTGTGTTTGATCCAGCGCAGAAGAAGAGCTGGTGAGTCTCACATTTACTCCaattACAAACACTTGACTTTAATGAGCAGAAAACAAGAGCAACATTCCTGATCCCTGAgcaaacaacaaaacaccacTGAAGAAGAGCTCATGGCAAACTACTGCTCACAATGCGCACAATGGAGATTCCATTGCTTTTAATGGAGACTCTATTGCTCATGTGCCTCATTTTCTGCCTTCTATTGGTGGCCTGTTAAAAGCAGTCGATCCTAATGGAGAATGTGGCCAAACACAGCACAAACCAGGACAATGTGCTGCTTTTAATGCCTCAAATCTGATGCTCTGGGATCTTTTAATGCTGTCTGTAATGGAAACCAGTAGACTTTCTGTTGTGTTTTCTCCTCAATCCTCAGCAGCTCATCAAAGAGCGAGCGGTGAATCAGCGGTCAAAGATGAGAATCAAGTCCACTATCAAACAATCCACATGTCCATTAATCCTGCTGCCAGAGCCCATGAGCAGACGGAGGATTCAGTCACTTATTCTGAGGTCACTTGTGCTGGGAAAAAGCCGGAGAAATCAGCCAGTGATGATGATGGTAATGACTCAGTGACTTAC

Function

GO:

id name namespace
GO:0043001 Golgi to plasma membrane protein transport biological_process
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-120305-3 Predicted to enable MHC class II protein binding activity and protein tyrosine kinase binding activity. Predicted to be involved in T cell activation; interleukin-15-mediated signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to be active in external side of plasma membrane and membrane raft.

Ensembl:

ensembl_id ENSDARG00000094448 ENSDARG00000115199

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052403 False 956 lncRNA 0.46 8 550216 697367
TCONS_00050809 False 1450 mRNA 0.42 7 562333 697363
TCONS_00052405 False 936 lncRNA 0.47 11 650405 664380
TCONS_00052404 False 948 lncRNA 0.46 12 650405 664380
TCONS_00050812 True 752 processed_transcript 0.45 6 650429 653741

Neighbor

gene id symbol gene type direction distance location
XLOC_025931 si:dkey-12f6.5 coding downstream 28087 495748 ~ 522129 (-)
XLOC_025930 NA coding downstream 108008 439917 ~ 442208 (-)
XLOC_025929 CU394254.2 coding downstream 144606 402886 ~ 405610 (-)
XLOC_025928 mhc1zja coding downstream 147476 383848 ~ 402740 (-)
XLOC_025927 mhc1zaa coding downstream 182811 346530 ~ 367405 (-)
XLOC_025937 AL929520.2 coding upstream 22855 720222 ~ 722125 (-)
XLOC_025938 NA coding upstream 275174 972541 ~ 972799 (-)
XLOC_025939 NA coding upstream 314113 1011480 ~ 1028413 (-)
XLOC_025940 NA coding upstream 435539 1132906 ~ 1146553 (-)
XLOC_025941 NA coding upstream 466398 1163765 ~ 1164930 (-)
XLOC_025926 CU394254.1 non-coding downstream 205279 344817 ~ 344937 (-)
XLOC_025924 CABZ01089980.1 non-coding downstream 227818 314376 ~ 322398 (-)
XLOC_025923 NA non-coding downstream 249589 292774 ~ 300627 (-)

Expression


Co-expression Network