RNA id: TCONS_00050812


Basic Information

Item Value
RNA id TCONS_00050812
length 752
RNA type processed_transcript
GC content 0.45
exon number 6
gene id XLOC_025932
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 550216 ~ 697367 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atagtgcttccgttcccctcctcggggaacgaagggttactttagtaacctcgaacggtacatgatgatgatgatgatgatgatgatgatgatgatTTCAGTTCTGCTTTCTGCTGCTGCTTTGGCTGTTTTCATCGCTGCTGTTCTGTGTTTGATCCAGCGCAGAAGAAGAGCTGGTGAGTCTCACATTTACTCCaattACAAACACTTGACTTTAATGAGCAGAAAACAAGAGCAACATTCCTGATCCCTGAgcaaacaacaaaacaccacTGAAGAAGAGCTCATGGCAAACTACTGCTCACAATGCGCACAATGGAGATTCCATTGCTTTTAATGGAGACTCTATTGCTCATGTGCCTCATTTTCTGCCTTCTATTGGTGGCCTGTTAAAAGCAGTCGATCCTAATGGAGAATGTGGCCAAACACAGCACAAACCAGGACAATGTGCTGCTTTTAATGCCTCAAATCTGATGCTCTGGGATCTTTTAATGCTGTCTGTAATGGAAACCAGTAGACTTTCTGTTGTGTTTTCTCCTCAATCCTCAGCAGCTCATCAAAGAGCGAGCGGTGAATCAGCGGTCAAAGATGAGAATCAAGTCCACTATCAAACAATCCACATGTCCATTAATCCTGCTGCCAGAGCCCATGAGCAGACGGAGGATTCAGTCACTTATTCTGAGGTCACTTGTGCTGGGAAAAAGCCGGAGAAATCAGCCAGTGATGATGATGGTAATGACTCAGTGACTTAC

Function

GO:

id name namespace
GO:0043001 Golgi to plasma membrane protein transport biological_process
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000131391

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052884 lncRNA downstream 73567 562096 ~ 576862 (-) True XLOC_025933
TCONS_00052883 lncRNA downstream 128300 506134 ~ 522129 (-) True XLOC_025931
TCONS_00052882 lncRNA downstream 208221 439917 ~ 442208 (-) True XLOC_025930
TCONS_00052881 lncRNA downstream 208272 439917 ~ 442157 (-) False XLOC_025930
TCONS_00052402 lncRNA downstream 334623 315141 ~ 315806 (-) True XLOC_025924
TCONS_00052885 lncRNA upstream 11374 665115 ~ 688868 (-) True XLOC_025936
TCONS_00052406 lncRNA upstream 318800 972541 ~ 972799 (-) True XLOC_025938
TCONS_00052886 lncRNA upstream 357739 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00052887 lncRNA upstream 479165 1132906 ~ 1146553 (-) False XLOC_025940
TCONS_00052888 lncRNA upstream 510024 1163765 ~ 1164930 (-) True XLOC_025941
TCONS_00050810 mRNA downstream 65479 580351 ~ 584950 (-) True XLOC_025934
TCONS_00050808 mRNA downstream 144188 495748 ~ 506241 (-) False XLOC_025931
TCONS_00050805 mRNA downstream 247689 383848 ~ 402740 (-) False XLOC_025928
TCONS_00050806 mRNA downstream 247715 383886 ~ 402714 (-) True XLOC_025928
TCONS_00050804 mRNA downstream 283055 364054 ~ 367374 (-) True XLOC_025927
TCONS_00050814 mRNA upstream 479167 1132908 ~ 1146497 (-) True XLOC_025940
TCONS_00050815 mRNA upstream 532799 1186540 ~ 1190132 (-) False XLOC_025942
TCONS_00050816 mRNA upstream 533304 1187045 ~ 1187727 (-) True XLOC_025942
TCONS_00050817 mRNA upstream 537629 1191370 ~ 1204341 (-) True XLOC_025943
TCONS_00050819 mRNA upstream 574391 1228132 ~ 1232384 (-) True XLOC_025945
TCONS_00050811 other downstream 18793 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050807 other downstream 244819 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050799 other downstream 305492 344817 ~ 344937 (-) True XLOC_025926
TCONS_00050813 other upstream 66481 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050818 other upstream 553357 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050829 other upstream 751763 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 1209130 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050835 other upstream 1209130 1862871 ~ 1875971 (-) False XLOC_025959

Expression Profile

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