Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050805 |
| length | 1388 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 7 |
| gene id | XLOC_025928 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 383848 ~ 402740 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0009897 | external side of plasma membrane | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-130206-11 | Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in gill; intestine; kidney; liver; and spleen. |
| ensembl_id | ENSDART00000105659 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050797 | lncRNA | downstream | 61450 | 314376 ~ 322398 (-) | False | XLOC_025924 |
| TCONS_00052401 | lncRNA | downstream | 68042 | 314733 ~ 315806 (-) | False | XLOC_025924 |
| TCONS_00052402 | lncRNA | downstream | 68042 | 315141 ~ 315806 (-) | True | XLOC_025924 |
| TCONS_00052400 | lncRNA | downstream | 83221 | 292774 ~ 300627 (-) | True | XLOC_025923 |
| TCONS_00052399 | lncRNA | downstream | 91235 | 284300 ~ 292613 (-) | True | XLOC_025922 |
| TCONS_00052881 | lncRNA | upstream | 37177 | 439917 ~ 442157 (-) | False | XLOC_025930 |
| TCONS_00052882 | lncRNA | upstream | 37177 | 439917 ~ 442208 (-) | True | XLOC_025930 |
| TCONS_00052883 | lncRNA | upstream | 103394 | 506134 ~ 522129 (-) | True | XLOC_025931 |
| TCONS_00052403 | lncRNA | upstream | 147476 | 550216 ~ 697367 (-) | False | XLOC_025932 |
| TCONS_00052884 | lncRNA | upstream | 159356 | 562096 ~ 576862 (-) | True | XLOC_025933 |
| TCONS_00050800 | mRNA | downstream | 16443 | 346530 ~ 367405 (-) | False | XLOC_025927 |
| TCONS_00050804 | mRNA | downstream | 16474 | 364054 ~ 367374 (-) | True | XLOC_025927 |
| TCONS_00050802 | mRNA | downstream | 16565 | 353231 ~ 367283 (-) | False | XLOC_025927 |
| TCONS_00050801 | mRNA | downstream | 16565 | 353231 ~ 367283 (-) | False | XLOC_025927 |
| TCONS_00050803 | mRNA | downstream | 16565 | 363615 ~ 367283 (-) | False | XLOC_025927 |
| TCONS_00050808 | mRNA | upstream | 93008 | 495748 ~ 506241 (-) | False | XLOC_025931 |
| TCONS_00050809 | mRNA | upstream | 159593 | 562333 ~ 697363 (-) | False | XLOC_025932 |
| TCONS_00050810 | mRNA | upstream | 177611 | 580351 ~ 584950 (-) | True | XLOC_025934 |
| TCONS_00050814 | mRNA | upstream | 730168 | 1132908 ~ 1146497 (-) | True | XLOC_025940 |
| TCONS_00050815 | mRNA | upstream | 783800 | 1186540 ~ 1190132 (-) | False | XLOC_025942 |
| TCONS_00050799 | other | downstream | 38911 | 344817 ~ 344937 (-) | True | XLOC_025926 |
| TCONS_00050807 | other | upstream | 146 | 402886 ~ 405610 (-) | True | XLOC_025929 |
| TCONS_00050811 | other | upstream | 226967 | 629707 ~ 631636 (-) | True | XLOC_025935 |
| TCONS_00050812 | other | upstream | 247689 | 650429 ~ 653741 (-) | True | XLOC_025932 |
| TCONS_00050813 | other | upstream | 317482 | 720222 ~ 722125 (-) | True | XLOC_025937 |
| TCONS_00050818 | other | upstream | 804358 | 1207098 ~ 1207250 (-) | True | XLOC_025944 |
