RNA id: TCONS_00050807


Basic Information

Item Value
RNA id TCONS_00050807
length 282
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_025929
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 402886 ~ 405610 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGCAAAGTCACAATTAGGAAAACTTGAAAGAATACAATCCCAAGCTCTTAGAATTTGTTGCGGAGCATATCCTTCCTCTCCAGTTCCAGCTTTGCAGGTGGAGATGGGGGAAATGCCAATTCAACTAAGAAGGAAACAACTGATATTGACATACTGGGCAAGAACAAAAGGCCAAGAGGTTAATCATCCTGTAAAAACACTAATGGAGGTATGTTGGCTGTAGATGGAGGAGCTGAACACGCAGCAACATCGAAGGCTCGGGTTTTGAAGAGTCaagag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050797 lncRNA downstream 80488 314376 ~ 322398 (-) False XLOC_025924
TCONS_00052401 lncRNA downstream 87080 314733 ~ 315806 (-) False XLOC_025924
TCONS_00052402 lncRNA downstream 87080 315141 ~ 315806 (-) True XLOC_025924
TCONS_00052400 lncRNA downstream 102259 292774 ~ 300627 (-) True XLOC_025923
TCONS_00052399 lncRNA downstream 110273 284300 ~ 292613 (-) True XLOC_025922
TCONS_00052881 lncRNA upstream 34307 439917 ~ 442157 (-) False XLOC_025930
TCONS_00052882 lncRNA upstream 34307 439917 ~ 442208 (-) True XLOC_025930
TCONS_00052883 lncRNA upstream 100524 506134 ~ 522129 (-) True XLOC_025931
TCONS_00052403 lncRNA upstream 144606 550216 ~ 697367 (-) False XLOC_025932
TCONS_00052884 lncRNA upstream 156486 562096 ~ 576862 (-) True XLOC_025933
TCONS_00050805 mRNA downstream 146 383848 ~ 402740 (-) False XLOC_025928
TCONS_00050806 mRNA downstream 172 383886 ~ 402714 (-) True XLOC_025928
TCONS_00050800 mRNA downstream 35481 346530 ~ 367405 (-) False XLOC_025927
TCONS_00050804 mRNA downstream 35512 364054 ~ 367374 (-) True XLOC_025927
TCONS_00050802 mRNA downstream 35603 353231 ~ 367283 (-) False XLOC_025927
TCONS_00050808 mRNA upstream 90138 495748 ~ 506241 (-) False XLOC_025931
TCONS_00050809 mRNA upstream 156723 562333 ~ 697363 (-) False XLOC_025932
TCONS_00050810 mRNA upstream 174741 580351 ~ 584950 (-) True XLOC_025934
TCONS_00050814 mRNA upstream 727298 1132908 ~ 1146497 (-) True XLOC_025940
TCONS_00050815 mRNA upstream 780930 1186540 ~ 1190132 (-) False XLOC_025942
TCONS_00050799 other downstream 57949 344817 ~ 344937 (-) True XLOC_025926
TCONS_00050811 other upstream 224097 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050812 other upstream 244819 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050813 other upstream 314612 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050818 other upstream 801488 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050829 other upstream 999894 1405504 ~ 1433905 (-) False XLOC_025953

Expression Profile

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