RNA id: TCONS_00050810


Basic Information

Item Value
RNA id TCONS_00050810
length 414
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_025934
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 580351 ~ 584950 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGATAGGAGTCCTCTGTTTCTGCTGCTCATCTTCTGGACACTCAGCACAGgtgtgtttggagaAGAGGACACTCATGTGTTCAGCAGATCTGGAGAAACTGTTCATCTGCCCTGTAGAAACACTGATCAGTACTGCAGAACATCAGGAACTACATGGACCTACAGCAGTTACAGACAGACAGCAGCAGTTCAGCTGATTGGTTTAGGGGTAAAGAAGAGAAACTCAGAGAGACTGAATCTGGGCTCTGACTGCTCTCTGATCATCAGTAGAGTCACAACAGAAGATGCTGGACGTTACACCTGCCAACAGTGGAGTGGACGAGGAGGACACCAGTATGGACCTGATTCAGCTGTGTATCTGCATGTTGTTGCTGtctctccatcatcatcatcatcatcatcatcttca

Function

GO:

id name namespace
GO:0042110 T cell activation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0035723 interleukin-15-mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0045121 membrane raft cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:1990782 protein tyrosine kinase binding molecular_function
GO:0042289 MHC class II protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120305-1 Predicted to enable MHC class II protein binding activity and protein tyrosine kinase binding activity. Predicted to be involved in T cell activation; interleukin-15-mediated signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and membrane raft.

Ensembl:

ensembl_id ENSDART00000164752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052884 lncRNA downstream 3489 562096 ~ 576862 (-) True XLOC_025933
TCONS_00052883 lncRNA downstream 58222 506134 ~ 522129 (-) True XLOC_025931
TCONS_00052882 lncRNA downstream 138143 439917 ~ 442208 (-) True XLOC_025930
TCONS_00052881 lncRNA downstream 138194 439917 ~ 442157 (-) False XLOC_025930
TCONS_00052401 lncRNA downstream 264545 314733 ~ 315806 (-) False XLOC_025924
TCONS_00052405 lncRNA upstream 65455 650405 ~ 664380 (-) False XLOC_025932
TCONS_00052404 lncRNA upstream 65455 650405 ~ 664380 (-) False XLOC_025932
TCONS_00052885 lncRNA upstream 80165 665115 ~ 688868 (-) True XLOC_025936
TCONS_00052406 lncRNA upstream 387591 972541 ~ 972799 (-) True XLOC_025938
TCONS_00052886 lncRNA upstream 426530 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00050808 mRNA downstream 74110 495748 ~ 506241 (-) False XLOC_025931
TCONS_00050805 mRNA downstream 177611 383848 ~ 402740 (-) False XLOC_025928
TCONS_00050806 mRNA downstream 177637 383886 ~ 402714 (-) True XLOC_025928
TCONS_00050804 mRNA downstream 212977 364054 ~ 367374 (-) True XLOC_025927
TCONS_00050803 mRNA downstream 213068 363615 ~ 367283 (-) False XLOC_025927
TCONS_00050814 mRNA upstream 547958 1132908 ~ 1146497 (-) True XLOC_025940
TCONS_00050815 mRNA upstream 601590 1186540 ~ 1190132 (-) False XLOC_025942
TCONS_00050816 mRNA upstream 602095 1187045 ~ 1187727 (-) True XLOC_025942
TCONS_00050817 mRNA upstream 606420 1191370 ~ 1204341 (-) True XLOC_025943
TCONS_00050819 mRNA upstream 643182 1228132 ~ 1232384 (-) True XLOC_025945
TCONS_00050807 other downstream 174741 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050799 other downstream 235414 344817 ~ 344937 (-) True XLOC_025926
TCONS_00050811 other upstream 44757 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050812 other upstream 65479 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050813 other upstream 135272 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050818 other upstream 622148 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050829 other upstream 820554 1405504 ~ 1433905 (-) False XLOC_025953

Expression Profile

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