RNA id: TCONS_00050814


Basic Information

Item Value
RNA id TCONS_00050814
length 3459
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_025940
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1132906 ~ 1146553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGACGGAGGAAAAGCCCGTAAAGCGCGGAcgggagtgagtgtgtgtgtgtgagttgtgctgttcagtgtgtgtgtgtatgtgttcggTGTGGAGCAGCGATGGAGCACGGAGGGGCGCTGTGGTCGCCCGGTCCCAGTTCTCCTCAATCCCAGCATGCAGTTCGCTCTGGATCTGCTGGTGCACCACAGAGAGGAATGCGGCGTTCCCAAAGACAACAGCTACATGTTCGCTAGACCGGCCGCCATGACGCACTTCCGCGGCTCCGACTGTCTGCGCGGATTTGCTAGAAGCTGCGGCGCAGCAAGCCCGGAGAGCCTGACGTCTGGAGGCCTGAGGAACCACACGGGGGCGCTGCTGAGTGTCATGGACCTGACCGACAGACAGATGCAGGAGCTGCAGAACGCACTCGGCCTGCAGAACACACTGCAGCCGACTGCTAACAGAACACTGGAGCTCGCTCGCATTAGCAAACTCCTGCTAGCACTGCAACAGGGGCGATTAGCGGAGTACTACGGCAGGAGCCTGGAGGAGATCCGGGTTGAGCCGGACGAAAAGGTTGTGGTGTGGGACGAGGAGCGCAGGAGCACACAGGAGGACCTCCGCTCTCCCACCGTCATTGGTAAGCGTGTGCAGAAGAAGCAGCCGTGGCAGCAGACCGAGGTGCAGGCGGTGGAGCGGCACATGATGAACTTCATCACATCCTGTACGGTTCCCGCTAAGAGCCACTGCGAGAGCTGCTTACAGGCCGAGCCCGAGGCGCTGCGGAACCGGGACTGGAAGAGCCTGAAGTTCTTCATCTATAACCGCATCACAGCCTATAAGAGGAATCTGCAGAGCGCCGGCAGCCTCCAGTCCCTCTGCACAGCGGTCTCTCTACAGGAGCCCTTCCTCAACTCTAGCCTTTACTCTCTGCCAGAAATCCCCACACTGCTGCCCGAGCACTCAGAGCTCAAGACCATCAAACCCATATAGAGTCAGAGCTGGAGATCTTTAAACTCATATAGAGTCATGCCTATAGACTGTCAAACCGCTGTAGAGTTATGACTCAAGATCATCAAATCAATATAGGGTCATGTCTGAAGATGCTCAAGCTGATATATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGTCTGAAGATCGTCAAACCGATAAATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATCATCAAACGATATATAGTCACGTCTGAAGATCGTCAAACTGATGTATAGTCACGCCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATGGTCAAACTGATATATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATCATCTAACCGATATATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGTCTGAAGATCGTCAAACCGATAAATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATCATCAAACGATATATAGTCACGTCTGAAGATCGTCAAACTGATGTATAGTCACGCCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATGGTCAAACTGATATATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATCATCTAACCGATATATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACATCTGAAGATCATCTAACCGATATATAGTCACGTCTGAAGATCATCTAACCGATATATAGTCACGTCTGAAGATCGTCAAACCGATATATAGTCACGCCTGAAGATCATTAAACCGATATATAGTCACGTCTGAAGATCATCAAACTGATATAGTCACACCTGAAGATCATCAAACGATATATAGTCACGTCTGAAGATCGTCAAACCAATAGTCACGTCTGAAGATGGTCAAACTGATATATATTGTCACGTCTGAAGATCATCAAACCGATATATAGTCACGTCTGAAGATGGTCAAACTGATATATAGTCACGTCTGAAGATGGTCAAACTGATATATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATCGTCAAACCGATAGTCACGTCTGAAGATCGTCAAACTGATATATAGTCACGTCTGAAGATGGTCAAACTGATATAGTCACGCTAGTACGTAGAGTAATACTGATAGATCGTCAAACATATAGTCATGTCCAAAGATCATCAAACCGATATAGTCATGCCTTTTGATTGTTAAACTCCTGTATGTCGGTTCGACGATCTTCAAGTTTTACTCTACAGTAGTTTGATGATTTAAAATTCTAAGATCATCAAACCGCAGTAAAGCTTAAAGATATAACTGATATAGTGATGTATGAAGATGGTAAAACTGCTGTAGTCACCTCAAAATCATCAGTGGAGTATAGACACACCTGAAGATGAGAACACCGCTATATAGACTGTTGGACGATCTTCAAGTGACTCTGCATTCATACCTGAACTCGTCACACCAGCGCCGCCAGTGGACACTCTGCGTACAGCAGGTGCAGGAGGCTGCAGTGTGgtgaaatgtaaatacatttgttCCTATATTTAATAATGTACAATTTGTTTCAATAAGTCCGTATGATAAATATGGATGTTCATAGCAGTTTATAATGCTGTCATGTTATTCACTCAGTTCCTGTTTAATGTTCTCTGCCTGTTATTCTGTCTACATATTCATCCATCTCTGTTCATCTGTCAGGTTATTCTCACTCATTTTTGATAGAGTTTTATATGTAATGGATTACAATAAACCAGAGATGGTCAGCTGTTCAACAGGTTCATGATTATATATGATCACCGTCATCCACACACTGTCTAACATTGCTCAGACTTCAGCAGTACAGAGGGAAACACTGCAGAACTCATGCTCAGGTTAAGCGTCAGGATAACTGATGCTCCCGGATATTCAGCGGTTAATAATATCTGCTGTCCGAGTTATGTTTGCTTTGCCTGTATGAAGATGAAACCTCGTCCATGATTCTAGAGAACTGCAGTTGGACTCGAGACTGATGTGAGCtcctgtataaaatggaaaatcCACAACTATAAtggaaagtgtgtgtgttctgcgtCTGTGTGTAACTCCTCTACTGTTAAATATGAGTTTGGATTGTTTTATGTGCTATTATATGACTGCACATGTGAAATGCACAATGCAGTTTAATCCAAGACATTTATACTGTTAATAAAGATTTctatt

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000149061

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052886 lncRNA downstream 104495 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00052406 lncRNA downstream 160109 972541 ~ 972799 (-) True XLOC_025938
TCONS_00052403 lncRNA downstream 435541 550216 ~ 697367 (-) False XLOC_025932
TCONS_00052885 lncRNA downstream 444040 665115 ~ 688868 (-) True XLOC_025936
TCONS_00052405 lncRNA downstream 468528 650405 ~ 664380 (-) False XLOC_025932
TCONS_00052888 lncRNA upstream 17268 1163765 ~ 1164930 (-) True XLOC_025941
TCONS_00052889 lncRNA upstream 122402 1268899 ~ 1283247 (-) True XLOC_025946
TCONS_00052407 lncRNA upstream 178460 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052408 lncRNA upstream 309645 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00050832 lncRNA upstream 368133 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00050809 mRNA downstream 435545 562333 ~ 697363 (-) False XLOC_025932
TCONS_00050810 mRNA downstream 547958 580351 ~ 584950 (-) True XLOC_025934
TCONS_00050808 mRNA downstream 626667 495748 ~ 506241 (-) False XLOC_025931
TCONS_00050805 mRNA downstream 730168 383848 ~ 402740 (-) False XLOC_025928
TCONS_00050806 mRNA downstream 730194 383886 ~ 402714 (-) True XLOC_025928
TCONS_00050815 mRNA upstream 40043 1186540 ~ 1190132 (-) False XLOC_025942
TCONS_00050816 mRNA upstream 40548 1187045 ~ 1187727 (-) True XLOC_025942
TCONS_00050817 mRNA upstream 44873 1191370 ~ 1204341 (-) True XLOC_025943
TCONS_00050819 mRNA upstream 81635 1228132 ~ 1232384 (-) True XLOC_025945
TCONS_00050820 mRNA upstream 113853 1260350 ~ 1283247 (-) False XLOC_025946
TCONS_00050813 other downstream 410783 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050812 other downstream 479167 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050811 other downstream 501272 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050807 other downstream 727298 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050799 other downstream 787971 344817 ~ 344937 (-) True XLOC_025926
TCONS_00050818 other upstream 60601 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050829 other upstream 259007 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 716374 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050835 other upstream 716374 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other upstream 722746 1869243 ~ 1875852 (-) True XLOC_025959

Expression Profile

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