RNA id: TCONS_00050836


Basic Information

Item Value
RNA id TCONS_00050836
length 527
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_025959
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1862871 ~ 1875971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAACAGTTGGGCAGACATCACCCTACAGCATTTTCAGGAGcgtTTATAATCTGTTGAATATGGCAGAAATGACACCTTGTATAAATGTGGTCCTGCTTGGAAAAACAGGATCTGGAAAAAGTTCATCAGGAAACACAATCCTGGGTCGACAAGCTTTCATCTCAAAGCGAAGATCCGTATCAGTCACACGAGACGTTGCTGTGGAGTCTGGATCATTCTGTGAACTACCAGTCACTGTTTATGACACACCAggtttattaaatacaaatatgagTGAAGAAGAGATTCAGCAGATGATCAATAAGAAGGTCCTCCAGAAATGTTCATcaggtctgtgtgtgtttctgctggtcATCAAAGCTGACAGATTCACTGAAGAAGAGAGAAAGACTGTGGAGATGATTGAGAAGATCCTGGGAGAAAACAACCAGAAAGACATCTGGATTCTTTTCACCAGAGGAGACGAACTGGAGGAAGAAAACACGACAATCCAGGAGTTCATAGAGGAGACTGAAGAACTGAAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000147477

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052891 lncRNA downstream 152270 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052890 lncRNA downstream 184065 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00050832 lncRNA downstream 348625 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052408 lncRNA downstream 379086 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00052407 lncRNA downstream 536484 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052892 lncRNA upstream 137472 2013324 ~ 2026202 (-) False XLOC_025964
TCONS_00052409 lncRNA upstream 251792 2127644 ~ 2131830 (-) False XLOC_025969
TCONS_00052410 lncRNA upstream 252543 2128395 ~ 2130490 (-) False XLOC_025969
TCONS_00052411 lncRNA upstream 252686 2128538 ~ 2130543 (-) True XLOC_025969
TCONS_00052893 lncRNA upstream 450352 2326204 ~ 2335791 (-) False XLOC_025971
TCONS_00050833 mRNA downstream 10045 1842616 ~ 1859198 (-) True XLOC_025958
TCONS_00050831 mRNA downstream 348586 1511199 ~ 1520657 (-) False XLOC_025955
TCONS_00050830 mRNA downstream 435108 1414870 ~ 1434135 (-) True XLOC_025953
TCONS_00050828 mRNA downstream 460756 1405504 ~ 1408487 (-) False XLOC_025953
TCONS_00050827 mRNA downstream 468934 1395079 ~ 1400309 (-) True XLOC_025952
TCONS_00050838 mRNA upstream 19671 1895523 ~ 1906976 (-) True XLOC_025961
TCONS_00050839 mRNA upstream 54214 1930066 ~ 1963126 (-) False XLOC_025962
TCONS_00050840 mRNA upstream 55963 1931815 ~ 1938665 (-) False XLOC_025962
TCONS_00050841 mRNA upstream 56070 1931922 ~ 1938588 (-) False XLOC_025962
TCONS_00050842 mRNA upstream 83849 1959701 ~ 1970820 (-) True XLOC_025962
TCONS_00050829 other downstream 435338 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050818 other downstream 661993 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050813 other downstream 1147118 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050812 other downstream 1215502 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050811 other downstream 1237607 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050837 other upstream 5030 1880882 ~ 1888204 (-) True XLOC_025960
TCONS_00050849 other upstream 237515 2113367 ~ 2113483 (-) True XLOC_025968
TCONS_00050851 other upstream 453856 2329708 ~ 2333171 (-) False XLOC_025971
TCONS_00050852 other upstream 453861 2329713 ~ 2335791 (-) True XLOC_025971
TCONS_00050861 other upstream 1305353 3181205 ~ 3185593 (-) False XLOC_025983

Expression Profile

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