XLOC_025952 (wbp11)


Basic Information

Item Value
gene id XLOC_025952
gene name wbp11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1395079 ~ 1400309 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050827
AGAATGCAGAGTCCGTGGAGGTGGACAGTATTCCTCTTCCAGAAATGCCTCACGCTCCCTCCAGCATTCTCATCCAGGACATCCCACTGCCCGGAGCCCAGCCACCCTCCATCCTGAAGAAAAGCAGCGCACTGGGGAAAGCGTCGTCTCTCTCTGCCGCGGCTCTGGCTGGAGTTCCACGGCTGCCGGCGGGACGCAAACCCCCAGGGCCTCCACCGGGCCCCCCACCCCCACAGATCCTGCAGCTGTATGGCAACACACGCCGCACAGagGCCAGCGCAGGCTCGGACACAGAGATGATGGACGGCGGTCGAGACTCCGACAGTAAGAGCGAAGCAGACGAGGAGAGCGACTCTCAGGAGGACAGCAGTGCAGAGAGAGAGGACAGTGACCGGGGAGAGAGAgacgaggagagagagagagcagacaaacacacagGGCGCAGTGTGCGGTTCGCAGATATGCCATCTCCCAACAAGAAGAAGCGTCGTGTGGTGAAGACGAAGAGCATCACTCCACTGCAGGCCATGATGCTCCGCATGGCAGGTCAGTCTGTGccggaggaagaggaggaggatgaagaggaggagtACAGTGAATCTGAGGACTCCGAGGCTGAGGATCAGGCCTCCACTGACGCTCCGCAGCCATTGGTCAATCCTAGACTTCCTGTTCCATCTGCACCAATGGCAGCGCAACAACCTCCTTCACTCATGCAGGCTCCACCAATAACAGGGCCTCCTCCTTTAGGACCGCCTCCTGCTCCTCCAATGAGGCCGCCAGGACCACCTTCGGGCCCGCCTCCAGGACCACCTCCTGGTGCTCCTCCATTCTTGAGGCCTCCTGGGCTTCCTTCGGCTCTTAGGGGCCCCATGCCACGTCTGCTGCCTCCGGGGCCCCCGCCAGGACGCCCACCCGGACCCCCACCAGGCCCTCCACCCGGCCTGCCCCCTGGACCCCCGCCAAGAGGACCCCCGCCCCGCCTGCCCCCACCCGCTCCACCAGGAATGCCGCCACCTCCCCCTCCCCCGCGCGCCGGCCCACCACGTATGGCTCCACCCCTCTCGCTGTTCCCGCCCCCGCTCAACCCCAATGTGCTCAGTGCTCCACCCAGCATTGTCCCCCGTCAGAAGTCTCCCGCTGCCTCGTCCAATGAGGGTGCTCCAAGCGGCTCTGCCCTGCAGATGCCGCCGCCCCCCGGCACCACAGCCAATCCGCTGGCCCCCACCATCGAGAAGCGGGCCACGGTGGCGGGTTCGGGTGGCGCTTCTGCGCAGGGGGGCGGGGCCACCATCTCTGCCAAACCGCAGATCATCAACCCCAAGGCGGAGGTGACGCGCTTCGTGCCCACAGCGCTCCGCGTGCGCAGAGACCGGGCAGGGGGGACAGGGCGCAGGGAGGAGGAGCGCCCACCAGCCAATCAGCAGACCCCTGCCCACCAGGCCCCGCCCATCGCCCACGCCCCCACCCCGCCTAACCTGAAGACCAAAGACCAGGTGTACGAGGCCTTCATGCGGGAGATGGAGGGGCTgctctgaggtgtgtgtgtgtgtgtgcacgcacgcgtgcgcgtgtgtgtgtgtgtgcgcgtgcttgCAGATATTGGTCAcagtacaggtgtgtgtgtgtgcgtgtgtgcgcgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgcgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgcgtgtgtgcgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtaatgtcaaTAAACAGTTGAGCTGACTCTGATGTCCTGATGAGTGTATTATGAGTGTATTAGAGCTGTGCAGCAGGAGTGGAGCAGGTAATAAACACTCTGAGCACAGGG

Function

symbol description
wbp11 Predicted to be involved in mRNA cis splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; mRNA processing; and rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of spliceosomal complex. Orthologous to human WBP11 (WW domain binding protein 11).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03040 Spliceosome
ko01009 Protein phosphatases and associated proteins
ko03041 Spliceosome

Ensembl:

ensembl_id ENSDARG00000101411

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050827 True 2056 mRNA 0.63 7 1395079 1400309

Neighbor

gene id symbol gene type direction distance location
XLOC_025951 ddx47 coding downstream 6143 1387435 ~ 1388936 (-)
XLOC_025950 ddx47 coding downstream 7787 1378098 ~ 1387292 (-)
XLOC_025949 FP236551.1 coding downstream 30133 1352555 ~ 1364946 (-)
XLOC_025948 tmem106c coding downstream 55859 1323732 ~ 1339220 (-)
XLOC_025947 GRIN2B coding downstream 77789 1303862 ~ 1317290 (-)
XLOC_025953 bglap coding upstream 5195 1405504 ~ 1434135 (-)
XLOC_025954 NA coding upstream 55833 1456142 ~ 1490157 (-)
XLOC_025955 polr2f coding upstream 110890 1511199 ~ 1520657 (-)
XLOC_025956 NA coding upstream 186525 1586834 ~ 1685178 (-)
XLOC_025957 NA coding upstream 225048 1625357 ~ 1716973 (-)
XLOC_025944 NA non-coding downstream 187829 1207098 ~ 1207250 (-)
XLOC_025941 NA non-coding downstream 230149 1163765 ~ 1164930 (-)
XLOC_025940 NA non-coding downstream 248526 1132906 ~ 1146553 (-)
XLOC_025939 NA non-coding downstream 366666 1011480 ~ 1028413 (-)
XLOC_025938 NA non-coding downstream 422280 972541 ~ 972799 (-)
XLOC_025959 BX465228.2 non-coding upstream 462562 1862871 ~ 1875971 (-)
XLOC_025960 BX465228.1 non-coding upstream 480573 1880882 ~ 1888204 (-)

Expression


Co-expression Network