RNA id: TCONS_00050827


Basic Information

Item Value
RNA id TCONS_00050827
length 2056
RNA type mRNA
GC content 0.63
exon number 7
gene id XLOC_025952
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1395079 ~ 1400309 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATGCAGAGTCCGTGGAGGTGGACAGTATTCCTCTTCCAGAAATGCCTCACGCTCCCTCCAGCATTCTCATCCAGGACATCCCACTGCCCGGAGCCCAGCCACCCTCCATCCTGAAGAAAAGCAGCGCACTGGGGAAAGCGTCGTCTCTCTCTGCCGCGGCTCTGGCTGGAGTTCCACGGCTGCCGGCGGGACGCAAACCCCCAGGGCCTCCACCGGGCCCCCCACCCCCACAGATCCTGCAGCTGTATGGCAACACACGCCGCACAGagGCCAGCGCAGGCTCGGACACAGAGATGATGGACGGCGGTCGAGACTCCGACAGTAAGAGCGAAGCAGACGAGGAGAGCGACTCTCAGGAGGACAGCAGTGCAGAGAGAGAGGACAGTGACCGGGGAGAGAGAgacgaggagagagagagagcagacaaacacacagGGCGCAGTGTGCGGTTCGCAGATATGCCATCTCCCAACAAGAAGAAGCGTCGTGTGGTGAAGACGAAGAGCATCACTCCACTGCAGGCCATGATGCTCCGCATGGCAGGTCAGTCTGTGccggaggaagaggaggaggatgaagaggaggagtACAGTGAATCTGAGGACTCCGAGGCTGAGGATCAGGCCTCCACTGACGCTCCGCAGCCATTGGTCAATCCTAGACTTCCTGTTCCATCTGCACCAATGGCAGCGCAACAACCTCCTTCACTCATGCAGGCTCCACCAATAACAGGGCCTCCTCCTTTAGGACCGCCTCCTGCTCCTCCAATGAGGCCGCCAGGACCACCTTCGGGCCCGCCTCCAGGACCACCTCCTGGTGCTCCTCCATTCTTGAGGCCTCCTGGGCTTCCTTCGGCTCTTAGGGGCCCCATGCCACGTCTGCTGCCTCCGGGGCCCCCGCCAGGACGCCCACCCGGACCCCCACCAGGCCCTCCACCCGGCCTGCCCCCTGGACCCCCGCCAAGAGGACCCCCGCCCCGCCTGCCCCCACCCGCTCCACCAGGAATGCCGCCACCTCCCCCTCCCCCGCGCGCCGGCCCACCACGTATGGCTCCACCCCTCTCGCTGTTCCCGCCCCCGCTCAACCCCAATGTGCTCAGTGCTCCACCCAGCATTGTCCCCCGTCAGAAGTCTCCCGCTGCCTCGTCCAATGAGGGTGCTCCAAGCGGCTCTGCCCTGCAGATGCCGCCGCCCCCCGGCACCACAGCCAATCCGCTGGCCCCCACCATCGAGAAGCGGGCCACGGTGGCGGGTTCGGGTGGCGCTTCTGCGCAGGGGGGCGGGGCCACCATCTCTGCCAAACCGCAGATCATCAACCCCAAGGCGGAGGTGACGCGCTTCGTGCCCACAGCGCTCCGCGTGCGCAGAGACCGGGCAGGGGGGACAGGGCGCAGGGAGGAGGAGCGCCCACCAGCCAATCAGCAGACCCCTGCCCACCAGGCCCCGCCCATCGCCCACGCCCCCACCCCGCCTAACCTGAAGACCAAAGACCAGGTGTACGAGGCCTTCATGCGGGAGATGGAGGGGCTgctctgaggtgtgtgtgtgtgtgtgcacgcacgcgtgcgcgtgtgtgtgtgtgtgcgcgtgcttgCAGATATTGGTCAcagtacaggtgtgtgtgtgtgcgtgtgtgcgcgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgcgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgcgtgtgtgcgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtaatgtcaaTAAACAGTTGAGCTGACTCTGATGTCCTGATGAGTGTATTATGAGTGTATTAGAGCTGTGCAGCAGGAGTGGAGCAGGTAATAAACACTCTGAGCACAGGG

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03040 Spliceosome
ko01009 Protein phosphatases and associated proteins
ko03041 Spliceosome

Ensembl:

ensembl_id ENSDART00000159893

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052407 lncRNA downstream 62320 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052889 lncRNA downstream 111832 1268899 ~ 1283247 (-) True XLOC_025946
TCONS_00052888 lncRNA downstream 230149 1163765 ~ 1164930 (-) True XLOC_025941
TCONS_00052887 lncRNA downstream 248526 1132906 ~ 1146553 (-) False XLOC_025940
TCONS_00052886 lncRNA downstream 366666 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00052408 lncRNA upstream 55833 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00050832 lncRNA upstream 114321 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052890 lncRNA upstream 186525 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00052891 lncRNA upstream 225048 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052892 lncRNA upstream 613015 2013324 ~ 2026202 (-) False XLOC_025964
TCONS_00050826 mRNA downstream 6143 1387435 ~ 1388936 (-) True XLOC_025951
TCONS_00050825 mRNA downstream 7787 1378098 ~ 1387292 (-) True XLOC_025950
TCONS_00050824 mRNA downstream 30133 1352555 ~ 1364946 (-) True XLOC_025949
TCONS_00050823 mRNA downstream 55859 1323732 ~ 1339220 (-) False XLOC_025948
TCONS_00050822 mRNA downstream 77789 1303862 ~ 1317290 (-) True XLOC_025947
TCONS_00050828 mRNA upstream 5195 1405504 ~ 1408487 (-) False XLOC_025953
TCONS_00050830 mRNA upstream 14561 1414870 ~ 1434135 (-) True XLOC_025953
TCONS_00050831 mRNA upstream 110890 1511199 ~ 1520657 (-) False XLOC_025955
TCONS_00050833 mRNA upstream 442307 1842616 ~ 1859198 (-) True XLOC_025958
TCONS_00050838 mRNA upstream 495214 1895523 ~ 1906976 (-) True XLOC_025961
TCONS_00050818 other downstream 187829 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050813 other downstream 672954 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050812 other downstream 741338 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050811 other downstream 763443 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050807 other downstream 989469 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050829 other upstream 5195 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 462562 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050835 other upstream 462562 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other upstream 468934 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050837 other upstream 480573 1880882 ~ 1888204 (-) True XLOC_025960

Expression Profile

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