RNA id: TCONS_00052892


Basic Information

Item Value
RNA id TCONS_00052892
length 1959
lncRNA type sense_over
GC content 0.40
exon number 9
gene id XLOC_025964
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2013324 ~ 2033105 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgatTCATTATTCAGCCATCATTTCTACTTTTAGTATCCCActaggcCCCACATCAAAAATGGAATCGAATGCACAATTAAACTTCATTTTACTGGGGAAAAAGGGAGCTGGGAAGAGTTCATCAGGAAACACAATACTCGGACGACAAGCTTTCACAACAAAGAAATGCTCCAGTTCTGTTACTCAAGATCAAACTATGGGGTCTGGAACAGTTGATGGGTTTTCAGTCACCGTGTACGACACACCAGGATTCTTTGACCCTAAGCTGAGTGAGCATGAGATTCAGCAGAAAATTGGAAAGGTTCTCCAAAAATCTGAAGTGGGTGAATGGGCATTTCTAATCGTTATTAAAGCAGACAGTTTCACTGAAGAGGAGAGAATAACAGTAAAGAAGATCGAGAAGCTGCTGGGAGAAAGACGCTTTCAGAAAACCTGGATTCTCTTCACCAGAGCAGATGAATTAGAAGATGACAACGTGACAGAACAAGAATTCCTTAACATAAATGGAGGTTTGAAGAAGCTTGTTCAGAAATATGATCAGAGATACCACATGTTCAACAACAAGAAGAAAGGACCAAGTAAACAAGTTAAAATGTTACTTACCAAAATAATCCAGCCATTTGTTAAAGAAAAAGAAgttataaatgaaattaaaagtaatacaagaaaaacactgcCTCTAGGCCTCGGAGCCAATCAAAAGAATGACAATTATGAAAACACTAGCACAAATaatgatCATTGCATTCAAAAGGTTTACGTCCCTTCAACATTTAATGTCATTTTCTCCTTTAgcatcaaTTCATCCTCAAATACTGTAATTTCACCACAGATTCAAAAGGAAACCAATAAGGTACACATGTACAATCGCCAAAGCCTTTTGGGAATCAGCAGTGGTTCTAGTGGCTACAATTACATTGGGGACGGAGTTCTTACCAGAGGTAAGGGTAAGACAGGTGTTGGGAAGAGTGCATCAGCAAACATCATACTGAGAAAAACAGCTTTTAAATCAGCACTGGCTTCAAAATCAGTGACCAGAGAGTGTCAGAAAGACAGAGCTGAGTTCAGCAGAGGACGCATAACCGTGATCGACACTCCAGGCCTGTTTGACACTGGAATTGATAATGCTCAGATCATGAAGGAGATTGTGAAGTGTGTGTCAATGGCAGCACCAGGACCGCATGTGTTTCTGTTGGTGATTTCACTGGTACGGTTCACAGATGAGGAGAAAGATGCAGTGAAGATGATCCAGGAGAGGTTTGGTGATCAATCCAGCATGTACACCATGGTGCTCTTCACCAGAGGAGACGATCTAGGAGGAACCAGCATTAAAGATTTTATTGAAGGAGATGAAAACTTACAGAACCTCATCCATCAGTGTGGAAACAGATACCATGTGTTCAGGAATAAAGAGACTGAAGATCAGGTGCAGGTTTCTGAACTACTGGAGAAGATTGACCGCATGGTGGCAGAAAATGGAGGAGGTTATTACACCAatgagatgtttcagcaggtGGAGAAAAACATCAGAGAAGAACAAAAGAGAATCCTGATGGAGAAAGTAGAGGAAATTAAGAGAAAAGAGAAAGAGCTGAGAGACAAATATGAAGCAGAAATGGAGCAAATAAAGAAGGAAACTGAGAGAAAAAGACAAGAGATGCAAGATGAACAAAAGATGAAGAAAGAGAAGGCTTTGGAAGAACAACAGAAGAAACACATAAAAGACCTGGAAGGAAAACATGAGAAAGAAAGCCAAAAACTCAAGGATGAAGTAAAACGTGAAACTAGAGAGCAAGCAGAGCGTGAATATCGTAAAAAAATTGACAGTATACCGTACAGGTCAAAGCGAGCTAGTGACTGGGGTTACTATGTTCCTGTTGTTGGAGCAGCTGCTGGAGGAGCTGTTGGTACTATTGAAGATGTTGGTGGTTGGATTAAAAAACGTTTCTTTTCTTAA

Function

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0043005 neuron projection cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052891 lncRNA downstream 296351 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052890 lncRNA downstream 328146 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00050832 lncRNA downstream 492706 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052408 lncRNA downstream 523167 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00052407 lncRNA downstream 680565 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052409 lncRNA upstream 101442 2127644 ~ 2131830 (-) False XLOC_025969
TCONS_00052410 lncRNA upstream 102193 2128395 ~ 2130490 (-) False XLOC_025969
TCONS_00052411 lncRNA upstream 102336 2128538 ~ 2130543 (-) True XLOC_025969
TCONS_00052893 lncRNA upstream 300002 2326204 ~ 2335791 (-) False XLOC_025971
TCONS_00052412 lncRNA upstream 301033 2327235 ~ 2331259 (-) False XLOC_025971
TCONS_00050843 mRNA downstream 24324 1979271 ~ 1989000 (-) True XLOC_025963
TCONS_00050842 mRNA downstream 42504 1959701 ~ 1970820 (-) True XLOC_025962
TCONS_00050839 mRNA downstream 50198 1930066 ~ 1963126 (-) False XLOC_025962
TCONS_00050840 mRNA downstream 74659 1931815 ~ 1938665 (-) False XLOC_025962
TCONS_00050841 mRNA downstream 74736 1931922 ~ 1938588 (-) False XLOC_025962
TCONS_00050845 mRNA upstream 43837 2070039 ~ 2072630 (-) True XLOC_025965
TCONS_00050846 mRNA upstream 57658 2083860 ~ 2091029 (-) True XLOC_025966
TCONS_00050847 mRNA upstream 79396 2105598 ~ 2110893 (-) False XLOC_025967
TCONS_00050848 mRNA upstream 81041 2107243 ~ 2110893 (-) True XLOC_025967
TCONS_00050850 mRNA upstream 174693 2200895 ~ 2209415 (-) True XLOC_025970
TCONS_00050837 other downstream 125120 1880882 ~ 1888204 (-) True XLOC_025960
TCONS_00050835 other downstream 137353 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other downstream 137472 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050834 other downstream 143425 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050829 other downstream 579419 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050849 other upstream 87165 2113367 ~ 2113483 (-) True XLOC_025968
TCONS_00050851 other upstream 303506 2329708 ~ 2333171 (-) False XLOC_025971
TCONS_00050852 other upstream 303511 2329713 ~ 2335791 (-) True XLOC_025971
TCONS_00050861 other upstream 1155003 3181205 ~ 3185593 (-) False XLOC_025983
TCONS_00050862 other upstream 1155648 3181850 ~ 3185546 (-) False XLOC_025983

Expression Profile

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