RNA id: TCONS_00050848


Basic Information

Item Value
RNA id TCONS_00050848
length 1863
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_025967
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2105598 ~ 2110893 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCTATAATAACATTTCATTTCACTGCTACTGGACAGtaaaaaaagtagtaaaatacTTAAATAGCCTAGTTTTGACTCAATGGGTTGTCAAAGATATAAAAACAGTAAGCAGCTTTTGAGTTCGCACCTAAAATCAGTCACAAATACTTTTCAGCTATGGTTCAAAATACTAATTGGGAATTCGCATAATCACTGTACTTTTGAATTATGTCTGTCCTGATAGCTCATCGGGGGAGTGGTATAAGATGCACATTCATTTCAAGTCCAACCAGTTTGAGCTGTAATGAGTGTCACTTTCATTTAACAAACACTGCAAAGCAAAATCATTCGGCtgaaatgatttaattttaaatgttttgttaaatgttttgtaaaGATGGCCGAATGCAGCCTATCATCTGCACATTCTGTGTCTGAGGAGTTGAGGATCGTGCTGCTGGGCTCTGAGGCAGCTGTTAAAGCCTCCTGTGGAAACACCATATTTGGTCGACAGGTGTTTTCAGAGTCGCAGCCTTCACCGCATTTATTTGAGAGGCATGATGGGATGGTTTTAAAAAGGCGTTTGGTGATCATCAACACTCCTGATCTGTTTAGTCCTCCTGTCTCTCCTGAAGAACAGGACCTGAAGAATTTTTTCCATCTGTCCTGTCCTGAACCTCACGCCCTCTTACTGGTCCTAAAATCTGGCACAATTACAAAGCAGGACAGAGATACCCTCCAACTCATTACAACTATTTTTGGCACTGGAGCATTTGAGTATGTGATCGTGGTCTTCATGCTCGAGGCCCAGATGGAGTATGTGAGCATTACAGACACTGACAGCAGATCAGAGAAGCCTCTGCTGCAGATCTCCAAATGTCCACACCATAATCTCCAGAGGAATGGAGACCAGTCACAGGTGCAGAACCTTCTGGAGATCATTGAGGAGATGGTGGAGGAAAACAGAGGCCATGATCTGAAGATGGATCCAAAACCTGGCCTGACCAAAACAGAGATCATCTGCCAAACAATGCTCAAAAGACATAAGAGTAAACCTTTACATTTTCATTACTGCATGCACTGAGGGAATATTATATTGTGGGAATTTCATAACATAGTAATAATTGTGATGCAATTGGGTGAATAAATTTTAAGATCTGTAGACAAAATAACCTCATCGTTTATGATGTTATTTCAGGTTTAAAGAGAGGGGCATGCAGCATGAATCATAGTAAGTATAAAGTAAATGTTCACTATTTTACCACAtctgattaaaaataattaaaaacattaacataGTTCATTTATGCATACTCATTATGGGTGTAATGATTACCTTAAATCATGGATCGATTCAAAATGACATTGGATTGTTCAGCCAGATCCCACAAGGAACTTACCTATATTACCTATTGTCAGAAAAGGGGCTACTTTAAATGAATTCATAAAATTTCCTTCATTTggaaacatgatttttaaaaggaccaTACCCCTCATTGGAGGATGAGCCAAGCGTACTAAAATacatgaatgagattgtacaaatgaatatgaattagccattaaattacGAAAGTTACAAATTGTTGCGAGATTGCGTTGGAGTGTCGCGTTTCGCCATGTTCTTAAAACAACAGGAAAGAGATTTCCTtgatttttacagctttttatttCATAAAGTTATGATCAAGATCTTTCCTTCACTTTGAAACATGATGGAGCTATAGTTGAGCCATCTTCTGGGGTGTCTTAGGTTTGCCAGAATGGTTTGCTGGATAGTTTGCCAGAATCTCTTTGAGGCTGGCAGTCTTCCTCCATGGTCTCCCTGAACACTTTATAAGCCTGACATTTTGCTTCTAAAAGCTTTGCTTTATCAGCTGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000189588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052892 lncRNA downstream 81041 2013324 ~ 2026202 (-) False XLOC_025964
TCONS_00052891 lncRNA downstream 390270 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052890 lncRNA downstream 422065 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00050832 lncRNA downstream 586625 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052408 lncRNA downstream 617086 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00052409 lncRNA upstream 16751 2127644 ~ 2131830 (-) False XLOC_025969
TCONS_00052410 lncRNA upstream 17502 2128395 ~ 2130490 (-) False XLOC_025969
TCONS_00052411 lncRNA upstream 17645 2128538 ~ 2130543 (-) True XLOC_025969
TCONS_00052893 lncRNA upstream 215311 2326204 ~ 2335791 (-) False XLOC_025971
TCONS_00052412 lncRNA upstream 216342 2327235 ~ 2331259 (-) False XLOC_025971
TCONS_00050846 mRNA downstream 16214 2083860 ~ 2091029 (-) True XLOC_025966
TCONS_00050845 mRNA downstream 34613 2070039 ~ 2072630 (-) True XLOC_025965
TCONS_00050844 mRNA downstream 74138 2013324 ~ 2033105 (-) True XLOC_025964
TCONS_00050843 mRNA downstream 118243 1979271 ~ 1989000 (-) True XLOC_025963
TCONS_00050842 mRNA downstream 136423 1959701 ~ 1970820 (-) True XLOC_025962
TCONS_00050850 mRNA upstream 90002 2200895 ~ 2209415 (-) True XLOC_025970
TCONS_00050853 mRNA upstream 461374 2572267 ~ 2589704 (-) False XLOC_025975
TCONS_00050854 mRNA upstream 461374 2572267 ~ 2591942 (-) False XLOC_025975
TCONS_00050855 mRNA upstream 461374 2572267 ~ 2592350 (-) False XLOC_025975
TCONS_00050856 mRNA upstream 461415 2572308 ~ 2593859 (-) True XLOC_025975
TCONS_00050837 other downstream 219039 1880882 ~ 1888204 (-) True XLOC_025960
TCONS_00050835 other downstream 231272 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other downstream 231391 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050834 other downstream 237344 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050829 other downstream 673338 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050849 other upstream 2474 2113367 ~ 2113483 (-) True XLOC_025968
TCONS_00050851 other upstream 218815 2329708 ~ 2333171 (-) False XLOC_025971
TCONS_00050852 other upstream 218820 2329713 ~ 2335791 (-) True XLOC_025971
TCONS_00050861 other upstream 1070312 3181205 ~ 3185593 (-) False XLOC_025983
TCONS_00050862 other upstream 1070957 3181850 ~ 3185546 (-) False XLOC_025983