XLOC_025975 (si:dkey-217f16.5)


Basic Information

Item Value
gene id XLOC_025975
gene name si:dkey-217f16.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2572267 ~ 2593859 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050853
gaacaggaaactgaggctacaattcacacagactcaccaaaactggacaatagaagattggagaaacGGCCAGTTTTGACCCCAGAGACGCCCATTTTCCTCATGACTCCCGCCGCTCAGGGCATCTCGGGCATCTTCACCTGGACGGCCCTGCTGCTCACCTGCCAACAGatctaCATGCACCTGCGCTACTACAACACACCCAACGAGCAGCGGCACATCGTGCGGATCCTCTTCATCGTGCCCATCTACGCCTTCGACTCGTGGCTCAGTCTGCTGTTCTTCACTAATGAGGAGTATTACGTCTACTTCGACACCGTCAGAGACTGCTATGAAGCGTTTGTGATCTACAACTTCCTGAGCTTGTGTTATGAGTATCTGGGCGGTGAGAGTGCCATCATGGCGGAGATCAGAGGGAAACCCATCCAGTCCAGCTTTGTTTACGGCACATGTTGTCTGTGGGGCAGAACCTACTCCATCGGCTTCCTGCGCTTCTGCAAGCAGgcgaCGCTGCAGTTCTGTGTGGTGAAGCCGCTGATGGCCATCATTACAGTGATCCTGCAGGCCTTCGGGAAATACAGAGACGGAGACTTCAAtgctgCTGGTGGCTATCTGTACGTGATGATCATCTATAACGTGTCGGTGAGTCTGTCTCTGTTTGCGCTCTTCCTCTTCTACTCGGCCACCGCTGAGCTGCTGGAGCCCTACAGCCCCATGCTCAAGTTCCTGATGGTCAAGTCTGTCATCTTCCTCTCCTTCTGGCAGGgtatGCTGCTGGCAATTCTGGAGAAGTGTGGAGCGTTCGCGCGCATCAGCTCTCCGGATGTGAGTGTGGGCGAGGGCACGGTTGCCGCCGGTTACCAGAACTTCATCATCTGCTGCGAGATGTTCTTCGCCGCTCTGGCGCTCAGACACGCCTTCACTTATAAAGTCTACATGGACAAGAGACTCGACCTGCAGgATTGTGTTCCTGTCTATGGCCAGTTCGgccgCAGCGCCCCCATGAGTATCTCCAGCAGTCTGAAGGAGACGATGAACCCGGGAGACATTCTGCAGGACGCCATTCACAACTTCTCCCCAGCCTATCAGCAGTACACACAGCAGAGCCGAGCAGAGCCAATCAGCAGATCCGACAGCTGCAGCAACGAGAAAACACTGCTGCTCAGCTCTGATGATGAGTTctga
>TCONS_00050854
accaggcccggattggctaatcaggagcaCCGGGAGGATTCCCGTgagccggtccGGCCCGGGGTCGTGACGGTGGCCCCTGAGAGTCACAACAGATCAGGGCCAGTTTTGACCCCAGAGACGCCCATTTTCCTCATGACTCCCGCCGCTCAGGGCATCTCGGGCATCTTCACCTGGACGGCCCTGCTGCTCACCTGCCAACAGatctaCATGCACCTGCGCTACTACAACACACCCAACGAGCAGCGGCACATCGTGCGGATCCTCTTCATCGTGCCCATCTACGCCTTCGACTCGTGGCTCAGTCTGCTGTTCTTCACTAATGAGGAGTATTACGTCTACTTCGACACCGTCAGAGACTGCTATGAAGCGTTTGTGATCTACAACTTCCTGAGCTTGTGTTATGAGTATCTGGGCGGTGAGAGTGCCATCATGGCGGAGATCAGAGGGAAACCCATCCAGTCCAGCTTTGTTTACGGCACATGTTGTCTGTGGGGCAGAACCTACTCCATCGGCTTCCTGCGCTTCTGCAAGCAGgcgaCGCTGCAGTTCTGTGTGGTGAAGCCGCTGATGGCCATCATTACAGTGATCCTGCAGGCCTTCGGGAAATACAGAGACGGAGACTTCAAtgctgCTGGTGGCTATCTGTACGTGATGATCATCTATAACGTGTCGGTGAGTCTGTCTCTGTTTGCGCTCTTCCTCTTCTACTCGGCCACCGCTGAGCTGCTGGAGCCCTACAGCCCCATGCTCAAGTTCCTGATGGTCAAGTCTGTCATCTTCCTCTCCTTCTGGCAGGgtatGCTGCTGGCAATTCTGGAGAAGTGTGGAGCGTTCGCGCGCATCAGCTCTCCGGATGTGAGTGTGGGCGAGGGCACGGTTGCCGCCGGTTACCAGAACTTCATCATCTGCTGCGAGATGTTCTTCGCCGCTCTGGCGCTCAGACACGCCTTCACTTATAAAGTCTACATGGACAAGAGACTCGACCTGCAGggccgCAGCGCCCCCATGAGTATCTCCAGCAGTCTGAAGGAGACGATGAACCCGGGAGACATTCTGCAGGACGCCATTCACAACTTCTCCCCAGCCTATCAGCAGTACACACAGCAGAGCCGAGCAGAGCCAATCAGCAGATCCGACAGCTGCAGCAACGAGAAAACACTGCTGCTCAGCTCTGATGATGAGTTctga
>TCONS_00050855
GTTAAAAATAtgtttcccaaccctgttcctgaagGGCCAGTTTTGACCCCAGAGACGCCCATTTTCCTCATGACTCCCGCCGCTCAGGGCATCTCGGGCATCTTCACCTGGACGGCCCTGCTGCTCACCTGCCAACAGatctaCATGCACCTGCGCTACTACAACACACCCAACGAGCAGCGGCACATCGTGCGGATCCTCTTCATCGTGCCCATCTACGCCTTCGACTCGTGGCTCAGTCTGCTGTTCTTCACTAATGAGGAGTATTACGTCTACTTCGACACCGTCAGAGACTGCTATGAAGCGTTTGTGATCTACAACTTCCTGAGCTTGTGTTATGAGTATCTGGGCGGTGAGAGTGCCATCATGGCGGAGATCAGAGGGAAACCCATCCAGTCCAGCTTTGTTTACGGCACATGTTGTCTGTGGGGCAGAACCTACTCCATCGGCTTCCTGCGCTTCTGCAAGCAGgcgaCGCTGCAGTTCTGTGTGGTGAAGCCGCTGATGGCCATCATTACAGTGATCCTGCAGGCCTTCGGGAAATACAGAGACGGAGACTTCAAtgctgCTGGTGGCTATCTGTACGTGATGATCATCTATAACGTGTCGGTGAGTCTGTCTCTGTTTGCGCTCTTCCTCTTCTACTCGGCCACCGCTGAGCTGCTGGAGCCCTACAGCCCCATGCTCAAGTTCCTGATGGTCAAGTCTGTCATCTTCCTCTCCTTCTGGCAGGgtatGCTGCTGGCAATTCTGGAGAAGTGTGGAGCGTTCGCGCGCATCAGCTCTCCGGATGTGAGTGTGGGCGAGGGCACGGTTGCCGCCGGTTACCAGAACTTCATCATCTGCTGCGAGATGTTCTTCGCCGCTCTGGCGCTCAGACACGCCTTCACTTATAAAGTCTACATGGACAAGAGACTCGACCTGCAGgATTGTGTTCCTGTCTATGGCCAGTTCGgccgCAGCGCCCCCATGAGTATCTCCAGCAGTCTGAAGGAGACGATGAACCCGGGAGACATTCTGCAGGACGCCATTCACAACTTCTCCCCAGCCTATCAGCAGTACACACAGCAGAGCCGAGCAGAGCCAATCAGCAGATCCGACAGCTGCAGCAACGAGAAAACACTGCTGCTCAGCTCTGATGATGAGTTctga
>TCONS_00050856
GTCGCGGAACAAAACAGCATGCGGGATTCGGCGTCCTGAGAGCGGCGGATGAGCGAAACCCACTGAACACCGGTTGGCTCCTCCCCCTGGTGTGTccagtgttctgattggctgtggtCTGTAGATGGCTCAGCTGTGGCGGAGGGCGGTGTCGTTGACTGGGAACGGGTCTCTGGTTGCCATGGCGCCAGGGCCCGGGGTCGTGACGGTGGCCCCTGAGAGTCACAACAGATCAGGGCCAGTTTTGACCCCAGAGACGCCCATTTTCCTCATGACTCCCGCCGCTCAGGGCATCTCGGGCATCTTCACCTGGACGGCCCTGCTGCTCACCTGCCAACAGatctaCATGCACCTGCGCTACTACAACACACCCAACGAGCAGCGGCACATCGTGCGGATCCTCTTCATCGTGCCCATCTACGCCTTCGACTCGTGGCTCAGTCTGCTGTTCTTCACTAATGAGGAGTATTACGTCTACTTCGACACCGTCAGAGACTGCTATGAAGCGTTTGTGATCTACAACTTCCTGAGCTTGTGTTATGAGTATCTGGGCGGTGAGAGTGCCATCATGGCGGAGATCAGAGGGAAACCCATCCAGTCCAGCTTTGTTTACGGCACATGTTGTCTGTGGGGCAGAACCTACTCCATCGGCTTCCTGCGCTTCTGCAAGCAGgcgaCGCTGCAGTTCTGTGTGGTGAAGCCGCTGATGGCCATCATTACAGTGATCCTGCAGGCCTTCGGGAAATACAGAGACGGAGACTTCAAtgctgCTGGTGGCTATCTGTACGTGATGATCATCTATAACGTGTCGGTGAGTCTGTCTCTGTTTGCGCTCTTCCTCTTCTACTCGGCCACCGCTGAGCTGCTGGAGCCCTACAGCCCCATGCTCAAGTTCCTGATGGTCAAGTCTGTCATCTTCCTCTCCTTCTGGCAGGgtatGCTGCTGGCAATTCTGGAGAAGTGTGGAGCGTTCGCGCGCATCAGCTCTCCGGATGTGAGTGTGGGCGAGGGCACGGTTGCCGCCGGTTACCAGAACTTCATCATCTGCTGCGAGATGTTCTTCGCCGCTCTGGCGCTCAGACACGCCTTCACTTATAAAGTCTACATGGACAAGAGACTCGACCTGCAGggccgCAGCGCCCCCATGAGTATCTCCAGCAGTCTGAAGGAGACGATGAACCCGGGAGACATTCTGCAGGACGCCATTCACAACTTCTCCCCAGCCTATCAGCAGTACACACAGCAGAGCCGAGCAGAGCCAATCAGCAGATCCGACAGCTGCAGCA

Function

symbol description
si:dkey-217f16.5 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM184B (transmembrane protein 184B).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111011-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM184B (transmembrane protein 184B).

Ensembl:

ensembl_id ENSDARG00000090876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050853 False 1185 mRNA 0.54 10 2572267 2589704
TCONS_00050854 False 1191 mRNA 0.56 9 2572267 2591942
TCONS_00050855 False 1152 mRNA 0.55 11 2572267 2592350
TCONS_00050856 True 1286 mRNA 0.57 9 2572308 2593859

Neighbor

gene id symbol gene type direction distance location
XLOC_025971 NA coding downstream 236476 2326204 ~ 2335791 (-)
XLOC_025970 CR933791.2 coding downstream 362852 2200895 ~ 2209415 (-)
XLOC_025969 NA coding downstream 440437 2127644 ~ 2131830 (-)
XLOC_025968 BX005442.1 coding downstream 458784 2113367 ~ 2113483 (-)
XLOC_025967 BX005442.2 coding downstream 461374 2105598 ~ 2110893 (-)
XLOC_025976 NA coding upstream 4852 2598711 ~ 3372259 (-)
XLOC_025977 si:dkey-217f16.6 coding upstream 8482 2602341 ~ 3153619 (-)
XLOC_025978 NA coding upstream 19522 2613381 ~ 3351744 (-)
XLOC_025979 NA coding upstream 383215 2977074 ~ 2981711 (-)
XLOC_025980 zgc:172090 coding upstream 422549 3016408 ~ 3019979 (-)
XLOC_025964 NA non-coding downstream 539162 2013324 ~ 2033105 (-)
XLOC_025960 BX465228.1 non-coding downstream 684063 1880882 ~ 1888204 (-)
XLOC_025981 NA non-coding upstream 560442 3154301 ~ 3156016 (-)
XLOC_025982 NA non-coding upstream 562563 3156422 ~ 3156707 (-)

Expression


Co-expression Network