XLOC_025979


Basic Information

Item Value
gene id XLOC_025979
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2977074 ~ 2981711 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052415
gagaattttggaaaaaatctgtggatttctgcggaattattttgtgagtatccagcggagtatcataactaaagccttaatatatgaaataaaaagtactaaattactgaataaaaacttaataaatttagatttacacatttactaaagtaaataaacagaattaatgatgggctaaaaatctgcagaaaactgcagaattctgcgtgcgcagattcagtgtgggcctagagatgggtaaagaaatctattggctttagttttgctgGCTGTTTTTCTGCACACTAAAAAAAGAGACCAGCTGCAGAGCCAATGGAGCTCCAGCAAGGGGATgcttgagctccaactcctcctcctataagctgttttaatatgTACACCCacccaggcacgtgcacacatagggctcaacctgtgcagtgcacatgccctttttagtcttggatataaTGTGCCCCcccgacgcgacacaccctccgtcccgcccttcagtaggcgcgcgacaacgccgctcttgagtacgcacgCTCaacccaccccccacccccctaccattcaaggtgttttaaacaatttacattttatttaggctggattattatttaatttgccAATCCAGTTCATGTTTTGGCATTGTTGAAGCATATAACGGACTTGTAGCAATTCACCTCAAATGTTGTCACTTCTTGTTCATCTTATCTAGTAGCATCATTTTATCTAGTAGATAACTAaacaacaaaatacatattaacaCTAAGAGACAAACTATAtaaaaaattgaGGAGTAAGTTTCAGGAAGTTTATTGGAGCAAGCAACAACATGGCAATATGTGAGTATATCAGTAATAGTATTTGATCTCCTCATCTGTGAACCGTACCAGTGGAATAACCAGCAGAAACACATGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052415 True 907 lncRNA 0.40 3 2977074 2981711

Neighbor

gene id symbol gene type direction distance location
XLOC_025975 si:dkey-217f16.5 coding downstream 383215 2572267 ~ 2593859 (-)
XLOC_025971 NA coding downstream 641283 2326204 ~ 2335791 (-)
XLOC_025970 CR933791.2 coding downstream 767659 2200895 ~ 2209415 (-)
XLOC_025969 NA coding downstream 845244 2127644 ~ 2131830 (-)
XLOC_025968 BX005442.1 coding downstream 863591 2113367 ~ 2113483 (-)
XLOC_025980 zgc:172090 coding upstream 34697 3016408 ~ 3019979 (-)
XLOC_025981 NA coding upstream 172590 3154301 ~ 3156016 (-)
XLOC_025982 NA coding upstream 174711 3156422 ~ 3156707 (-)
XLOC_025983 AL953907.1 coding upstream 199494 3181205 ~ 3189055 (-)
XLOC_025984 si:ch211-229i14.2 coding upstream 219201 3200912 ~ 3210640 (-)
XLOC_025964 NA non-coding downstream 943969 2013324 ~ 2033105 (-)
XLOC_025960 BX465228.1 non-coding downstream 1088870 1880882 ~ 1888204 (-)
XLOC_025985 NA non-coding upstream 284110 3265821 ~ 3267517 (-)
XLOC_025986 NA non-coding upstream 287026 3268737 ~ 3269941 (-)

Expression


Co-expression Network