XLOC_025971


Basic Information

Item Value
gene id XLOC_025971
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2326204 ~ 2335791 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052893
ATTTGcacttttatttataaacatgcaGCAAAGTAAAATCACTCGCCTGGAACGGTTAACTTCTTAATGTTTTGTGAAATGTGTTGTGAAGATGGCAGACGGCAGCCCATCATCCAGACAGTCCGTGAGAGATTTGAAGATTTTCCTCCTGGGGACGAGTATGTCAGAAAACAACAGAGTGGGAAACCTAATCTTGGgtaaaaatgtgtttgtaaagaaaacaccatcatctgatGAAAAGCACAGTGGAAGAGTGGAGGACAGAAACATCACAGTCATCATCTCTCACCTGCTTAAATTAAAACCAACACAAGAAGCAGTAAAGCAGAAAGCATCAGAGCTGTCTCGATTTAATCCTCATGTGATCATTCTGGTGCTACAGCTCAGTGGTTTCAGTGAGAAGCAGAAAGATTGATTAACTTCAGTGCTGATTGACTTGAAAGAGCAGGCAATGAAGCACACAATGATTCTGACCACTGACGACAAGAAACACAGTAGTAAAGCAGTCTGTGAAAGAAAATGAGCTTATTCAGCAGTTATCTGCAGAGTGTGGAGGAGGACGCCTTCAACTACTACACACAGAACGCTCTCAGTTACTTAAGAAAGTGGATGAAGTAATCACTCTTAGTGGTCATGAGACACAACATCAGTCATCATTGGATCAAGAGAATACGAGTGATGCGATGACTTTAAGGATTATTCTTCTGGGTAAAAGCAAGTCAGAAAACAGTCGAGTGGAAAATATCATCTTAGGACAAGCAGGGCTTTATAGTAAAGTTTGTCAAGATGTGGAGAGAGTCCGAGGAAAACTGAGGCACACATACGTGACGCTCATCAACAGTCCTCAGCTGCTCCAGCCTCATGTTTCACTTCATCAGATCACACAGACAGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTCTTCATCATCGTACTGCAGCATAAAGACTTCACTGAAGAAGACAGATGCAGAGTGAAAAGTGTCCAGAAAGAATTCAGTGAAGAGGCCATCAAACACACCATAGTGCTCACGACTGATGAAAAATCATATGGATCAATGATTACTTCTATGGTCAAAAATGATGCAGTGAATGAGTGTGGAGGAGGACATCTGCAGCTGGATGAAAGAAATCCAGAATGGTGTTCTGACCTACTGAAGAGGGTTGATGACATTCTGAAAGGAAATGAGAAACATTATCTCACTTGTGGGAAGTATAAAGATGTTAAAGGGACATCAGTCGATGAAGAGGAGACCAGATCTGAGGAAGACAATGAAGAGAGTGACAACAGTTATGGAGATTTCAGACAGGGATGCAATGaagCAGATGCATCTGGACAACAGAAGCTGAATCTGGTTCTGTGTGGAAGTAATGCAACACATACAGTCTCAGTGTCAAAGCTTCTCAGTCATTCCAGTCAGACAGACAGCAATGGAGTGTGTGTGAAGAAACAGAAGATTCATGGTCGTCAGATCAGTCTGCTGGAACTTCCAGCTCTCACTCCTCTCTCAGAGGAGGAAGTGATGCGTCAGACTCTCCGCTGTGTGTCTCTCAGTGATCCTGGAGTTCATGCTTTCCTCATCATTGTTACTGTTGGACATCTGACTGATGAAGATAAAGCAGAGATAGAGAAGATCCTGAAGACATTTGACTCTAAGGATCACGTTATTGTGCTCTTCACATCAGAGCTCACTGATGAAAGATTTGCAATAGATCTTGTTAACATCTACCCTGAGTGTCAGAGGTTGATTAGTCTTTGTGGAGGTCAGTACAGAGTGATTGGGTTAAAGAAACCTGAAGACTCTAAACAGATCCCAGAACTGCTGGAGTATGTAGAGAAGATGGAGACTGAACCATTCTCACCTGAGATGTACAGGTGTAGGTATCAAAGTGAGTTTCTCAGAACCCTGACAtcaGTATTTGATAGTTTGAAGTTCATAGTgaaaataaaatttccAGGTGCTGATTGTTCAGAAGATCTGCATTTTCTGAGGATTGTGCTGATCGGGAGAACAGGAAGTGGAAAGAGTGCAACAGGAAACACTATTCTGGGAAGAAATGAGTTTGTGAGTAAAGCAAAATCAGATTCAGTGACAACGGTTTGTGAGAAGGGAGTCAGAGAAGTTGATGGTCGATCAGTAGCTGTTGTTGATACTCCAGGGCTCTTCGACACAACACTGACAAATGAACAAGCGGTGGAAGAAATAGTGAAGTGTGTTTCACTGTCAGCTCCTGGACCTCATGTGTTTGTCATTGTGTTGAGTTTGGGAAGATTTACCAAAGAGGAGACAGAAACTAAGGACCTGATCAGGAAGATATTTGGTCTAAAAGCTGCTCAGTTCAGCATCGTTCTGTTTACCAGAGGAGACGAACTTGAGGATGAATCTATAGAGGATTATGTGAAGAGAAGCAAATCTGCAGAACTCCAGAAACTGATCAGAGATTGTGGAGACAGGTTCCTGGCTTTCAATAACagagaaaaacaagacaaaactcaaGTGATGAAGCTGTTAAAGATGATAGAAGAGGTGAAGAGTAATAACCAGAGTGGATTCTTCACTAACAGCATGTTTGAGGAGGCAGAGATGTCCTTGCAAGACAAATATGAGACTGAGATGGAAACACTCAAGAAAAGAATGGAAGAAGAGAAAATAAAATCAGATGAGGAAAAACAACAGAGAGAGGATGAGTTTAGACTAAGAGAGGAAAAACTCATCAACGAGTTTGAAGAAAAACATGAAGCAGAACAAAAGAAACAAGAGATGGAGAAACAGAAACTATTAGAAGAGGAAAAACAGCAGAGAGCTGAATATGATCAGAGAATAGAAGAAATGATGAGAGAGATTGAGAATCAGAGATCACAGTAtgaacaacagCAAAAGCAAATTATAGAAGAATTAAAGAGGAAAGAGGAAATTAAACGACAGCAGAGAGAATGGatacaagATGAAGCAGATAAACTCTACCAAAGCCTGATAACGAAGAAAGAGGAGCATTTAAAGAATCTCCAAGAAGAAGCTGACAAGAAGAAAAAATGT
>TCONS_00052412
AGGCACACATACGTGACGCTCATCAACAGTCCTCAGCTGCTCCAGCCTCATGTTTCACTTCATCAGATCACACAGACAGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTCTTCATCATCGTACTGCAGCATAAAGACTTCACTGAAGAAGACAGATGCAGAGTGAAAAGTGTCCAGAAAGAATTCAGTGAAGAGGCCATCAAACACACCATAGTGCTCACGACTGATGAAAAATCATATGGATCAATGATTACTTCTATGGTCAAAAATGATGCAGTGAATGAGTGTGGAGGAGGACATCTGCAGCTGGATGAAAGAAATCCAGAATGGTGTTCTGACCTACTGAAGAGGGTTGATGACATTCTGAAAGGAAATGAGAAACATTATCTCACTTGTGGGAAGTATAAAGATGTTAAAGGGACATCAGTCGATGAAGAGGAGACCAGATCTGAGGAAGACAATGAAGAGAGTGACAACAGTTATGGAGATTTCAGACAGGGATGCAATGaagCAGATGCATCTGGACAACAGAAGCTGAATCTGGTTCTGTGTGGAAGTAATGCAACACATACAGTCTCAGTGTCAAAGCTTCTCAGTCATTCCAGTCAGACAGACAGCAATGGAGTGTGTGTGAAGAAACAGAAGATTCATGGTCGTCAGATCAGTCTGCTGGAACTTCCAGCTCTCACTCCTCTCTCAGAGGAGGAAGTGATGCGTCAGACTCTCCGCTGTGTGTCTCTCAGTGATCCTGGAGTTCATGCTTTCCTCATCATTGTTACTGTTGGACATCTGACTGATGAAGATAAAGCAGAGATAGAGAAGATCCTGAAGACATTTGACTCTAAGGATCACGTTATTGTGCTCTTCACATCAGAGCTCACTGATGAAAGATTTGCAATAGATCTTGTTAACATCTACCCTGAGTGTCAGAGGTTGATTAGTCTTTGTGGAGGTCAGTACAGAGTGATTGGGTTAAAGAAACCTGAAGACTCTAAACAGATCCCAGAACTGCTGGAGTATGTAGAGAAGATGGAGACTGAACCATTCTCACCTGAGATGTACAGGTGTAGGTATCAAAGTGAGTTTCTCAGAACCCTGACAtcaGTATTTGATAGTTTGAAGTTCATAGTgaaaataaaatttccAGGTGCTGATTGTTCAGAAGATCTGCATTTTCTGAGGATTGTGCTGATCGGGAGAACAGGAAGTGGAAAGAGTGCAACAGGAAACACTATTCTGGGAAGAAATGAGTTTGTGAGTAAAGCAAAATCAGATTCAGTGACAACGGTTTGTGAGAAGGGAGTCAGAGAAGTTGATGGTCGATCAGTAGCTGTTGTTGATACTCCAGGGCTCTTCGACACAACACTGACAAATGAACAAGCGGTGGAAGAAATAGTGAAGTGTGTTTCACTGTCAGCTCCTGGACCTCATGTGTTTGTCATTGTGTTGAGTTTGGGAAGATTTACCAAAGAGGAGACAGAAACTAAGGACCTGATCAGGAAGATATTTGGTCTAAAAGCTGCTCAGTTCAGCATCGTTCTGTTTACCAGAGGAGACGAACTTGAGGATGAATCTATAGAGGATTATGTGAAGAGAAGCAAATCTGCAGAACTCCAGAAACTGATCAGAGATTGTGGAGACAGGTTCCTGGCTTTCAATAACagagaaaaacaagacaaaactcaaGTGATGAAGCTGTTAAAGATGATAGAAGAGGTGAAGAGTAATAACCAGAGTGGATTCTTCACTAACAGCATGTTTGAGGAGGCAGAGATGTCCATTAAGAAGAAGATGGAGGAAATTAtgaaggagagagaaagagaaaatcaGAAACAGAGAGAAGAGTTGCAAGACAAATATGAGACTGAGATGGAAACACTCAAGAAAAGAATGGAAGAAGAGAAAATAAAATCAGATGAGGAAAAACAACAGAGAGAGGATGAGTTTAGACTAAGAGAGGAAAAACTCATCAACGAGTTTGAAGAAAAACATGAAGCAGAACAAAAGAAACAAGAGATGGAGAAACAGAAACTATTAGAAGAGGAAAAACAGCAGAGAGCTGAATATGATCAGAGAATAGAAGAAATGATGAGAGAGATTGAGAATCAGAGATCACAGTAtgaacaacagcagaaagaaagagaagaagacagaaagagagaagagAAATATAGACAAGACCAAGACAAGATGAAAAGTGAACAAAAGCAAATTATAGAAGAATTAAAGAGGAAACAAGAAGAAGAAACTAAAAAGAGAGATTTGGAGGAGAAGAGGAGGAGtcaagaa
>TCONS_00052413
AGAAGTCATAGTTCACCTCGTGAGCGTCCTAACATGAGAGATTTGAAGATTTTCCTCCTGGGGACGAGTATGTCAGAAAACAACAGAGTGGGAAACCTAATCTTGGgtaaaaatgtgtttgtaaagaaaacaccatcatctgatGAAAAGCACAGTGGAAGAGTGGAGGACAGAAACATCACAGTCATCATCTCTCACCTGCTTAAATTAAAACCAACACAAGAAGCAGTAAAGCAGAAAGCATCAGAGCTGTCTCGATTTAATCCTCATGTGATCATTCTGGTGCTACAGCTCAGTGGTTTCAGTGAGAAGCAGAAAGTGCTGATTGACTTGAAAGAGCAGGCAATGAAGCACACAATGATTCTGACCACTGACGACAAGAAACACAGTAGTAAAGCAGTCTGTGAAAGAAAATGAGCTTATTCAGCAGTTATCTGCAGAGTGTGGAGGAGGACGCCTTCAACTACTACACACAGAACGCTCTCAGTTACTTAAGAAAGTGGATGAAGTAATCACTCTTAGTGGTCATGAGACACAACATCAGTCATCATTGGATCAAGAGAATACGAGTGATGCGATGACTTTAAGGATTATTCTTCTGGGTAAAAGCAAGTCAGAAAACAGTCGAGTGGAAAATATCATCTTAGGACAAGCAGGGCTTTATAGTAAAGTTTGTCAAGATGTGGAGAGAGTCCGAGGAAAACTGAGGCACACATACGTGACGCTCATCAACAGTCCTCAGCTGCTCCAGCCTCATGTTTCACTTCATCAGATCACACAGACAGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTCTTCATCATCGTACTGCAGCATAAAGACTTCACTGAAGAAGACAGATGCAGAGTGAAAAGTGTCCAGAAAGAATTCAGTGAAGAGGCCATCAAACACACCATAGTGCTCACGACTGATGAAAAATCATATGGATCAATGATTACTTCTATGGTCAAAAATGATGCAGTGAATGAGTGTGGAGGAGGACATCTGCAGCTGGATGAAAGAAATCCAGAATGGTGTTCTGACCTACTGAAGAGGGTTGATGACATTCTGAAAGGAAATGAGAAACATTATCTCACTTGTGGGAAGTATAAAGATGTTAAAGGGACATCAGTCGATGAAGAGGAGACCAGATCTGAGGAAGACAATGAAGAGAGTGACAACAGTTATGGAGATTTCAGACAGGGATGCAATGaagCAGATGCATCTGGACAACAGAAGCTGAATCTGGTTCTGTGTGGAAGTAATGCAACACATACAGTCTCAGTGTCAAAGCTTCTCAGTCATTCCAGTCAGACAGACAGCAATGGAGTGTGTGTGAAGAAACAGAAGATTCATGGTCGTCAGATCAGTCTGCTGGAACTTCCAGCTCTCACTCCTCTCTCAGAGGAGGAAGTGATGCGTCAGACTCTCCGCTGTGTGTCTCTCAGTGATCCTGGAGTTCATGCTTTCCTCATCATTGTTACTGTTGGACATCTGACTGATGAAGATAAAGCAGAGATAGAGAAGATCCTGAAGACATTTGACTCTAAGGATCACGTTATTGTGCTCTTCACATCAGAGCTCACTGATGAAAGATTTGCAATAGATCTTGTTAACATCTACCCTGAGTGTCAGAGGTTGATTAGTCTTTGTGGAGGTCAGTACAGAGTGATTGGGTTAAAGAAACCTGAAGACTCTAAACAGATCCCAGAACTGCTGGAGTATGTAGAGAAGATGGAGACTGAACCATTCTCACCTGAGATGTACAGGAAGGTATCAAAAAGATCTGCATTTTCTGAGGATTGTGCTGATCGGGAGAACAGGAAGTGGAAAGAG
>TCONS_00050851
CTGTTCGGCAACATGTTGTGTTCTTTTTTAATGTGTTTCAGTGAGAGATTTGAAGATTTTCCTCCTGGGGACGAGTATGTCAGAAAACAACAGAGTGGGAAACCTAATCTTGGgtaaaaatgtgtttgtaaagaaaacaccatcatctgatGAAAAGCACAGTGGAAGAGTGGAGGACAGAAACATCACAGTCATCATCTCTCACCTGCTTAAATTAAAACCAACACAAGAAGCAGTAAAGCAGAAAGCATCAGAGCTGTCTCGATTTAATCCTCATGTGATCATTCTGGTGCTACAGCTCAGTGGTTTCAGTGAGAAGCAGAAAGATTGATTAACTTCAGTGCTGATTGACTTGAAAGAGCAGGCAATGAAGCACACAATGATTCTGACCACTGACGACAAGAAACACAGTAGTAAAGCAGTCTGTGAAAGAAAATGAGCTTATTCAGCAGTTATCTGCAGAGTGTGGAGGAGGACGCCTTCAACTACTACACACAGAACGCTCTCAGTTACTTAAGAAAGTGGATGAAGTAATCACTCTTAGTGGTCATGAGACACAACATCAGTCATCATTGGATCAAGAGAATACAGATGCATCTGGACAACAGAAGCTGAATCTGGTTCTGTGTGGAAGTAATGCAACACATACAGTCTCAGTGTCAAAGCTTCTCAGTCATTCCAGTCAGACAGACAGCAATGGAGTGTGTGTGAAGAAACAGAAGATTCATGGTCGTCAGATCAGTCTGCTGGAACTTCCAGCTCTCACTCCTCTCTCAGAGGAGGAAGTGATGCGTCAGACTCTCCGCTGTGTGTCTCTCAGTGATCCTGGAGTTCATGCTTTCCTCATCATTGTTACTGTTGGACATCTGACTGATGAAGATAAAGCAGAGATAGAGAAGATCCTGAAGACATTTGACTCTAAGGATCACGTTATTGTGCTCTTCACATCAGAGCTCACTGATGAAAGATTTGCAATAGATCTTGTTAACATCTACCCTGAGTGTCAGAGGTTGATTAGTCTTTGTGGAGGTCAGTACAGAGTGATTGGGTTAAAGAAACCTGAAGACTCTAAACAGATCCCAGAACTGCTGGAGTATGTAGAGAAGATGGAGACTGAACCATTCTCACCTGAGATGTACAGG
>TCONS_00050852
ATTTGcacttttatttataaacatgcaGCAAAGTAAAATCACTCGCCTGGAACGGTTAACTTCTTAATGTTTTGTGAAATGTGTTGTGAAGATGGCAGACGGCAGCCCATCATCCAGACAGTCCGTGAGAGATTTGAAGATTTTCCTCCTGGGGACGAGTATGTCAGAAAACAACAGAGTGGGAAACCTAATCTTGGgtaaaaatgtgtttgtaaagaaaacaccatcatctgatGAAAAGCACAGTGGAAGAGTGGAGGACAGAAACATCACAGTCATCATCTCTCACCTGCTTAAATTAAAACCAACACAAGAAGCAGTAAAGCAGAAAGCATCAGAGCTGTCTCGATTTAATCCTCATGTGATCATTCTGGTGCTACAGCTCAGTGGTTTCAGTGAGAAGCAGAAAGATTGATTAACTTCAGTGCTGATTGACTTGAAAGAGCAGGCAATGAAGCACACAATGATTCTGACCACTGACGACAAGAAACACAGTAGTAAAGCAGTCTGTGAAAGAAAATGAGCTTATTCAGCAGTTATCTGCAGAGTGTGGAGGAGGACGCCTTCAACTACTACACACAGAACGCTCTCAGTTACTTAAGAAAGTGGATGAAGTAATCACTCTTAGTGGTCATGAGACACAACATCAGTCATCATTGGATCAAGAGAATACGAGTGATGCGATGACTTTAAGGATTATTCTTCTGGGTAAAAGCAAGTCAGAAAACAGTCGAGTGGAAAATATCATCTTAGGACAAGCAGGGCTTTATAGTAAAGTTTGTCAAGATGTGGAGAGAGTCCGAGGAAAACTGAGGCACACATACGTGACGCTCATCAACAGTCCTCAGCTGCTCCAGCCTCATGTTTCACTTCATCAGATCACACAGACAGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTCTTCATCATCGTACTGCAGCATAAAGACTTCACTGAAGAAGACAGATGCAGAGTGAAAAGTGTCCAGAAAGAATTCAGTGAAGAGGCCATCAAACACACCATAGTGCTCACGACTGATGAAAAATCATATGGATCAATGATTACTTCTATGGTCAAAAATGATGCAGTGAATGTGTTGAGATAGGAGTGTGGAGGAGGACATCTGCAGCTGGATGAAAGAAATCCAGAATGGTGTTCTGACCTACTGAAGAGGGTTGATGACATTCTGAAAGGAAATGAGAAACATTATCTCACTTGTGGGAAGTATAAAGATGTTAAAGGGACATCAGTCGATGAAGAGGAGACCAGATCTGAGGAAGACAATGAAGAGAGTGACAACAGTTATGGAGATTTCAGACAGGGATGCAATGaagCAGATGCATCTGGACAACAGAAGCTGAATCTGGTTCTGTGTGGAAGTAATGCAACACATACAGTCTCAGTGTCAAAGCTTCTCAGTCATTCCAGTCAGACAGACAGCAATGGAGTGTGTGTGAAGAAACAGAAGATTCATGGTCGTCAGATCAGTCTGCTGGAACTTCCAGCTCTCACTCCTCTCTCAGAGGAGGAAGTGATGCGTCAGACTCTCCGCTGTGTGTCTCTCAGTGATCCTGGAGTTCATGCTTTCCTCATCATTGTTACTGTTGGACATCTGACTGATGAAGATAAAGCAGAGATAGAGAAGATCCTGAAGACATTTGACTCTAAGGATCACGTTATTGTGCTCTTCACATCAGAGCTCACTGATGAAAGATTTGCAATAGATCTTGTTAACATCTACCCTGAGTGTCAGAGGTTGATTAGTCTTTGTGGAGGTCAGTACAGAGTGATTGGGTTAAAGAAACCTGAAGACTCTAAACAGATCCCAGAACTGCTGGAGTATGTAGAGAAGATGGAGACTGAACCATTCTCACCTGAGATGT

Function

GO:

id name namespace
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0032502 developmental process biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000052873

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052893 False 3047 lncRNA 0.41 12 2326204 2335791
TCONS_00052412 False 2298 lncRNA 0.41 6 2327235 2331259
TCONS_00052413 False 1846 lncRNA 0.43 8 2328307 2333399
TCONS_00050851 False 1142 processed_transcript 0.42 2 2329708 2333171
TCONS_00050852 True 1893 processed_transcript 0.43 4 2329713 2335791

Neighbor

gene id symbol gene type direction distance location
XLOC_025970 CR933791.2 coding downstream 116789 2200895 ~ 2209415 (-)
XLOC_025969 NA coding downstream 194374 2127644 ~ 2131830 (-)
XLOC_025968 BX005442.1 coding downstream 212721 2113367 ~ 2113483 (-)
XLOC_025967 BX005442.2 coding downstream 215311 2105598 ~ 2110893 (-)
XLOC_025966 si:dkey-88j15.4 coding downstream 235175 2083860 ~ 2091029 (-)
XLOC_025972 NA coding upstream 137639 2473430 ~ 3163735 (-)
XLOC_025973 NA coding upstream 139214 2475005 ~ 3164993 (-)
XLOC_025974 NA coding upstream 232689 2568480 ~ 3311200 (-)
XLOC_025975 si:dkey-217f16.5 coding upstream 236476 2572267 ~ 2593859 (-)
XLOC_025976 NA coding upstream 262920 2598711 ~ 3372259 (-)
XLOC_025964 NA non-coding downstream 293099 2013324 ~ 2033105 (-)
XLOC_025960 BX465228.1 non-coding downstream 438000 1880882 ~ 1888204 (-)
XLOC_025959 BX465228.2 non-coding downstream 450233 1862871 ~ 1875971 (-)
XLOC_025978 NA non-coding upstream 277590 2613381 ~ 3351744 (-)

Expression


Co-expression Network