XLOC_025966 (si:dkey-88j15.4)


Basic Information

Item Value
gene id XLOC_025966
gene name si:dkey-88j15.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2083860 ~ 2091029 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050846
TGCGcacttttattaataatcatGCAGCGGTTTAATCACTCGGCTGAAAAGGTTTATTTCTTAATGTCTTGTTAAATGTTTTAGTGAAGATGGCAGAGAGCAGTGCATTATCCAGACAGTCTGTGAGTGATCTGAGGATTGCCCTGCTGGGCACGAGTATGTCAGAAAACAGCAGAGTGGGAAACCTAATCTTGGGTAAAGGTGTGTTTGGAAAGAAAACCCCCTCAACTGATGAAGAACACAGTGGAAGAGTTGGGGACAGAAACATCACAGTCATCAGCACTGACCTGCTCAAAACAAAACTCAAACTAGAAGCAgcaacacagaaagcatttgAGCTGTCTCGTTTCAATCCTGACGTGATCATTCTGGTGCTGCAGCACAATGAATTCAGGCAATTTCATAAGGATCGACTACCTTCAGTGCTGATCTACTTTGGTGAGCAGGCAAAGAATCGGACAATGATTCTGACCACTGACGACGAGAAAGACAGCAGTACACAGCAGTCTGTGAAAGAAAATAAACGTATTCAGCAGTTATCTGCAGAGTGTGGAGGAGGACGCCTTCAGCTATTAAACACACTGCGCTCTGATATATTTCGGAAAGTGGATGAAGTTATCACTCATAATGGTCATGAGACACAACTGGACAAAGAGGACTatgatgatgctgatgatcTGAGGATTGTGGTGATGGGAAAGACAGGTGTTGGGAAGAGTGCCTCAGCAAACACCATACTGAGAAGAGAAGCTTTTAAATCAGTTCTGAATTCACAATCAGTGACCAAAGAGTGTCAGAAAGAGACAGCTGAGTTCAGCAGAAGATGCATAACCGTGATCGACACTCCAGGCCTGTTCGACACTGGAGTTGATAATCATGAGACCATGAAAGAGGTTGTGAAGTGTGTCTCGATGGCAGCACCAGGACCACATGTGTTTCTGCTGGTGATTTCACTGGGACGGTTCACCAAAGAGGAGAAAGATGCAGTGAAGATCATCCAGGAGAGGTTTGGTGATCAATCCAGCATGTACACCATGGTGCTCTTCACCAGAGGAGTCGATCTGAAAGGAACCAGCATTGAAGATTTTATTGAAGGAAACAGAAGCTTAGAGAACCTCCTCCATCAGTGTGGAAACAGATACCATGTGTTCAATAATGATGAGACTAATGATAAGACACAGGTCTCTGAACTGCTGGAGAAGATTGACCGCATGGTGGCAGAAAATGGAGGAAGTTTCTACACCAATGAGATGTTTCAACTGGTGGAGAAAAACATCAGAGAAGAACAAAAGAGAATCCTGATGGAGAATGAAGATGAaatcaatagaaaaaaagaagacaTAAGAGACAAATATGAAGCAGAAAAAGAGCAAATGAAGAAGGAAACTGAGAGAAAAAGACAAGAGATGCAAGATGAACTGAGAAAACGCAAAGAGGAGTTTGAAAAGGAAGAGGAGGAGATTAAGAAAGAAAAAGATGAAAGACTACAAAAAAAGCTGCAGAAAAAACAAGAAGAACagcagaaacactttgaagaaAAGATGAAGAGGATGGAGAAGGCTCTGGAAGAACAACAGAAGAACCTCATAAAATGCCTGGAAGAACAACATGACAAAGAAAAGCAAAAACTTAAGGAGGAAATAAAACGTGAAACTAGAAAGCAAGCAGAGCGGGAATACCGTAAAAGAATTGACAGTATACCCTACAGATCAAAGCGAGCTAGTGACTGGAGTTACTATGTTCCTGTTATTGGAGGGGCTGCTGGATCAATTGTTGGTTCTGCTGAAGACCTTTTCCATTGGATTTATGGGTTGATTTCTAAAACAAAATACTCCAAATAA

Function

symbol description
si:dkey-88j15.4 Predicted to enable GTP binding activity.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000079471

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050846 True 1841 mRNA 0.42 3 2083860 2091029

Neighbor

gene id symbol gene type direction distance location
XLOC_025965 BX005442.4 coding downstream 11230 2070039 ~ 2072630 (-)
XLOC_025964 NA coding downstream 50755 2013324 ~ 2033105 (-)
XLOC_025963 BX005442.3 coding downstream 94860 1979271 ~ 1989000 (-)
XLOC_025962 si:ch211-254c8.3 coding downstream 113040 1930066 ~ 1970820 (-)
XLOC_025961 zgc:101806 coding downstream 176884 1895523 ~ 1906976 (-)
XLOC_025967 BX005442.2 coding upstream 14569 2105598 ~ 2110893 (-)
XLOC_025968 BX005442.1 coding upstream 22338 2113367 ~ 2113483 (-)
XLOC_025969 NA coding upstream 36615 2127644 ~ 2131830 (-)
XLOC_025970 CR933791.2 coding upstream 109866 2200895 ~ 2209415 (-)
XLOC_025971 NA coding upstream 235175 2326204 ~ 2335791 (-)
XLOC_025960 BX465228.1 non-coding downstream 195656 1880882 ~ 1888204 (-)
XLOC_025959 BX465228.2 non-coding downstream 207889 1862871 ~ 1875971 (-)
XLOC_025957 NA non-coding downstream 366887 1625357 ~ 1716973 (-)
XLOC_025956 NA non-coding downstream 398682 1586834 ~ 1685178 (-)
XLOC_025972 NA non-coding upstream 382401 2473430 ~ 3163735 (-)
XLOC_025973 NA non-coding upstream 383976 2475005 ~ 3164993 (-)

Expression


Co-expression Network