RNA id: TCONS_00050825


Basic Information

Item Value
RNA id TCONS_00050825
length 906
RNA type mRNA
GC content 0.56
exon number 7
gene id XLOC_025950
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1378098 ~ 1387292 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtggaCAAAATACTGAAGGTGATCCCGCGTGACAGACGCACATTCCTGTTCTCAGCCACCATGACAAAGAaggtgcaGAAGCTCCAGCGTGCAGCTCTGCAGGACCCAGTGAAATGCTCCGTCTCCAGCAAATACGCCACAGTGGACAAACTGCAGCAGTTCTACATCTTCATCCCCTCCAAATATAAGgaCTGTTATCTGGTCTCCATCCTGAACGAGCTGGCGGGAAACTCCTTCATGGTGTTCTGCGGCACCTGCAACAACACCCAGCGTGTGGCGCTGCTGCTGCGCAACCTGGGCATCACCGCCATCCCTCTGCACGGCCAGATGAGCCAGaACAAGCGTCTCGGTGCCCTCAACAAGTTTAAGTCGAAGTCCCGCTCGGTGCTGCTGGCAACGGATGTTGCGTCACGAGGACTCGACATCCCACACGTGGACTGCGTCATCAACTTCGACATTCCCACACACTCCAAGGATTATATCCACCGTGTGGGCCGCACCGCCAGAGCAGGGAGGTCTGGGAAGTCCATCACGTTCGTCACACAgtatgATGTGGAGCTCTTCCAGCGGATTGAAGCGCTGATTGGCAAGAAACTTCCTGCTTTCCCGACACAGGAAGAGGAAGTGATGATGCTGGTGGAGCGAGTGAGCGAAGCGCAGCGGTTCGCACGGATAgaaATGAAGGAGAGCTCTGAGAAGAGGAAGCGGCCGAGTGCAGCACAGGAAGTGGATGAAGACGGTGAGCAGTCGAGTGGCGTGAGGAAGAAGGTGAAGGGTGGAGGGTTTAGACGGCCCTCCAGACGTGGACGCTGACCTCTGAGCCCCCTCTGATGACCTCTGACCCCCCCCTCTGATGACCTCTGACCCTCCTCTTCTCATTGTAATAAAGTGCTGCTGTTTTCCTTA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050522-359 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human DDX47 (DEAD-box helicase 47).

Ensembl:

ensembl_id ENSDART00000163535

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052407 lncRNA downstream 45339 1324957 ~ 1332759 (-) True XLOC_025948
TCONS_00052889 lncRNA downstream 94851 1268899 ~ 1283247 (-) True XLOC_025946
TCONS_00052888 lncRNA downstream 213168 1163765 ~ 1164930 (-) True XLOC_025941
TCONS_00052887 lncRNA downstream 231545 1132906 ~ 1146553 (-) False XLOC_025940
TCONS_00052886 lncRNA downstream 349685 1011480 ~ 1028413 (-) True XLOC_025939
TCONS_00052408 lncRNA upstream 68850 1456142 ~ 1490157 (-) True XLOC_025954
TCONS_00050832 lncRNA upstream 127338 1514630 ~ 1520618 (-) True XLOC_025955
TCONS_00052890 lncRNA upstream 199542 1586834 ~ 1685178 (-) True XLOC_025956
TCONS_00052891 lncRNA upstream 238065 1625357 ~ 1716973 (-) True XLOC_025957
TCONS_00052892 lncRNA upstream 626032 2013324 ~ 2026202 (-) False XLOC_025964
TCONS_00050824 mRNA downstream 13152 1352555 ~ 1364946 (-) True XLOC_025949
TCONS_00050823 mRNA downstream 38878 1323732 ~ 1339220 (-) False XLOC_025948
TCONS_00050822 mRNA downstream 60808 1303862 ~ 1317290 (-) True XLOC_025947
TCONS_00050820 mRNA downstream 94851 1260350 ~ 1283247 (-) False XLOC_025946
TCONS_00050821 mRNA downstream 115051 1261601 ~ 1263047 (-) False XLOC_025946
TCONS_00050826 mRNA upstream 143 1387435 ~ 1388936 (-) True XLOC_025951
TCONS_00050827 mRNA upstream 7787 1395079 ~ 1400309 (-) True XLOC_025952
TCONS_00050828 mRNA upstream 18212 1405504 ~ 1408487 (-) False XLOC_025953
TCONS_00050830 mRNA upstream 27578 1414870 ~ 1434135 (-) True XLOC_025953
TCONS_00050831 mRNA upstream 123907 1511199 ~ 1520657 (-) False XLOC_025955
TCONS_00050818 other downstream 170848 1207098 ~ 1207250 (-) True XLOC_025944
TCONS_00050813 other downstream 655973 720222 ~ 722125 (-) True XLOC_025937
TCONS_00050812 other downstream 724357 650429 ~ 653741 (-) True XLOC_025932
TCONS_00050811 other downstream 746462 629707 ~ 631636 (-) True XLOC_025935
TCONS_00050807 other downstream 972488 402886 ~ 405610 (-) True XLOC_025929
TCONS_00050829 other upstream 18212 1405504 ~ 1433905 (-) False XLOC_025953
TCONS_00050834 other upstream 475579 1862871 ~ 1869899 (-) False XLOC_025959
TCONS_00050835 other upstream 475579 1862871 ~ 1875971 (-) False XLOC_025959
TCONS_00050836 other upstream 481951 1869243 ~ 1875852 (-) True XLOC_025959
TCONS_00050837 other upstream 493590 1880882 ~ 1888204 (-) True XLOC_025960

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU175314 True 692 TUCP 0.49 3 CI01000029 4986185 ~ 4987425 (-)
bowfin (Amia calva) AMCG00014926 True 1384 mRNA 0.60 11 CM030128.1 39888100 ~ 39899640 (+)