RNA id: TU175314


Basic Information

Item Value
RNA id TU175314
length 692
RNA type TUCP
GC content 0.49
exon number 3
gene id G154415
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4986108 ~ 4990990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGCTAACACTAGCTGTGTTCTCCGCAGGACTACATCCACCGCGTGGGCCGCACGGCGAGAGCAGGGAGATCTGGGAAATCCATCACCTTCGTCACACAGTATGATGTGGAGCTGTTTCAGCGAATCGAAACGCTGATCGGGAAGAAACTGCCCGCCTTCCCCACACAGGAAGAGGAAGTGATGATGCTGGTGGAGCGAGTGAGCGAAGCCCAGCGGTTCGCACGCATTGAGATGAAGGAAAGTGCAGAAAAGAGGAAGCGGCCCAGAGCGGCGGAGGATGATGACGGCGAGCAGTCCAGCGGCGTGAGGAAGAAGGTCAAGGGCGGCTCGTTCAGAGGAGCGCGTGGAAGAGGCGGCGGCTCCAAGAGAGGAAGATGAAGATCAGTCTCTTGTCTGAATGACATCTGTAGTTTCTTCCTGTAAATCTAATAAATGCTGCATTCTCTTCTCCATTTTGAGTGAACTGTCCCTTTAAGATGTGTGCATTATGAACCCATGAATCACCGAGATCACCCTCCATTGAACCAGCGTCTAGGGTTTTTACCTGATCTCAAAACCGTTTTATACATTTGTTGGCAGTTTTAATGAGACATCTGTGTAATTAAAAAGGAAGAGTAGTAGTTACTCATATTGACCTGACAAAACAAGCCCTAACAATACCACATCAATGGTATTTGATGATTTGTTAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175345 lncRNA downstream 12221 4972971 ~ 4973964 (-) True G154442
TU175341 lncRNA downstream 19254 4966670 ~ 4966931 (-) True G154438
TU175340 lncRNA downstream 19586 4966281 ~ 4966599 (-) True G154437
TU175332 lncRNA downstream 29853 4956127 ~ 4956332 (-) True G154429
TU175331 lncRNA downstream 30061 4955834 ~ 4956124 (-) True G154428
TU175348 lncRNA upstream 19072 5006497 ~ 5006977 (-) True G154445
TU175411 lncRNA upstream 157102 5144527 ~ 5144866 (-) True G154498
TU175413 lncRNA upstream 167094 5154519 ~ 5154881 (-) True G154500
TU175664 lncRNA upstream 275115 5262540 ~ 5262782 (-) True G154730
TU175665 lncRNA upstream 282426 5269851 ~ 5270384 (-) True G154731
CI01000029_04898116_04905715.mRNA mRNA downstream 80374 4897624 ~ 4905811 (-) True CI01000029_04898116_04905715
CI01000029_04881932_04882348.mRNA mRNA downstream 102450 4881845 ~ 4883735 (-) True CI01000029_04881932_04882348
CI01000029_04611378_04794476.mRNA mRNA downstream 191709 4611378 ~ 4794476 (-) True CI01000029_04611378_04794476
CI01000029_04577893_04580321.mRNA mRNA downstream 405211 4577683 ~ 4580974 (-) True CI01000029_04577893_04580321
CI01000029_04514094_04517849.mRNA mRNA downstream 468336 4513850 ~ 4517849 (-) True CI01000029_04514094_04517849
CI01000029_04997226_05004488.mRNA mRNA upstream 9801 4997226 ~ 5004935 (-) True CI01000029_04997226_05004488
CI01000029_05008936_05021217.mRNA mRNA upstream 20617 5008042 ~ 5021217 (-) True CI01000029_05008936_05021217
CI01000029_05046771_05054238.mRNA mRNA upstream 58796 5046221 ~ 5054238 (-) True CI01000029_05046771_05054238
CI01000029_05055841_05068089.mRNA mRNA upstream 67960 5055385 ~ 5068127 (-) True CI01000029_05055841_05068089
CI01000029_05181056_05182090.mRNA mRNA upstream 193473 5180898 ~ 5182260 (-) True CI01000029_05181056_05182090
TU175091 other downstream 508973 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1278933 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 1699631 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 2393383 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 3692062 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU177741 other upstream 2182942 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 2378902 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 2378902 7366327 ~ 7369547 (-) False G156495

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050825 True 906 mRNA 0.56 7 NC_007114.7 1378098 ~ 1387292 (-)
bowfin (Amia calva) AMCG00014926 True 1384 mRNA 0.60 11 CM030128.1 39888100 ~ 39899640 (+)