RNA id: CI01000029_05008936_05021217.mRNA


Basic Information

Item Value
RNA id CI01000029_05008936_05021217.mRNA
length 2814
RNA type mRNA
GC content 0.43
exon number 18
gene id CI01000029_05008936_05021217
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5008042 ~ 5021217 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCAAAGTGGGCTTTGTTTTTCCAAAATCTGTCCATAATCTTAACCCCCATTTGGAATTACAGAATGCTGGTGGGCCATGTCAAGTCATAGTCAATAGATGGGAGACCCATCAGCTGCCACGCTCATTGAGTCCCTCAGTGTTATTTGTCATGGACAGATGTAAGATGTCAGCATTTCTTTGTGCTTGTGTTGCCACAAAAACAATTTGCTTGCATGAACCAGAGCATGTGATTGACGATGGACATTTTGGAGTCCATAATGGTGTTGAGTGTGTGGACTCTGGGTGGTTGACGGGCCAGACAGAAATTCGTCTCAGGCTTCATTACTCCGTGAAACCTCCAGTATCTATTACTAAGAAAAAATTTAAGAAGTCACGCTTCAGATTGAAGTTGATGCTGGAAGGAATTGAAGAAGAAGACGACGAAGAAGAAGAAAGCCCTTCATCATGGCATAAGATGACCACTACGCTGGAGATCAGTATGATCAGTGATGGCGGATATAAGTCTCGTCATTCCCAGCCAGAATGTGGATACGCTCTGGAACCCTCCAAGTGGACAGAATACATTATTCACACCATGGACCCTGACAACCTAGAGCTCACCTTTGAGTTCTTTGAGGAGGACTTGAGTGAACCTGTGGTTCAGGGTGATGCTCATCCAGGCCACGTAGGCACCGCATGCCTCTTGTCATCCTCTTTTGTGGAGAACGGAAAAGATTTGGGTGTAGTCACCCTGCCCATCATGAGTCGAAACGCCAGACAGACTATTGGAAAAGTCAGAGTGGATTACCTGGTGACGCGTCCTATCCAAGGCCTTCAATGTGACATGAGTCAGTCTTTCACCAAATACTGGAAGAAAAGGAGCCCTTTGGTTGTTGGACACAGAGGAGCAGGGAGCACACATGCTGCCAGGCATCACAAGATCAGGGAAAACACAATTGCCTCATTTCTGAGTGCAGCCAACCATGGAGCCGCTTATGTAGAGTTTGATGTTCATTTGTCTAAAGATTTAGTTCCAATCGTGTATCACGACCTCACCTGCTGTATTTCAACTAAAAAGAAAAATGACAAGAATTCAATGGTATTGTTCGAAGTTCCCGTCAAGGATCTTACGTTTGACCAACTTCAGCTTTTAAAACTGGACCATACAACTGCCATGGAAGTTCATGACCATAAAGACTTGCAGGATGAAGAAGAATATATAGATGAGCACCAGCCTTTCCCTTCCCTTTCACAGATATTCCAGGCTGTTCCAGATCATGTGGGATTCAACATTGAGCTGAAGTGGATCTGTCAGTTTAAGGATGGCTCCTGGGATGCAAAGCTCTCTACCTACTTCAACATGAATCAGTTCTTGGACATCATCCTCACATGCGTGCTGCAGAATGCCGGCAAGAGGAGGATAGTCTTCTCATGCTTTGATCCTGATGTTTGCACAATGGTGAGGCAAAAGCAGAACAAATACCCTATCCTGTTTCTGACCCAAGGAGTGACAGACCTCTACCCTGAACTAATGGACATCCGCTGTCAGAGCACTAAGATCGCAATGAGCTTTGCTCAGAGTGAGAACATACTGGGAATCAGCGCCCACACTGATGAGCTCTTGAGGAACATGGAGTTCATCAGAGAGGCTCAGTCCAAGGGACTAGTGGTCTTCTGCTGGGGCGACTATAACAACGACCATGAGAACAGGATGAAGCTGAGGGACCAGGGCATTGATGGACTCATATATGACAGAATCTGTGATGACAAGCTTGAGCAGTCAAACATTTTCAATGTAGAGGAACAGGTTTCTCTCAAGGATGTCATCCAAACATGCGCCTGTTCCACCTACAGCATTCCGTGCTCCTCCATTCCTTGTGCAGGAAAATCCCAGGAGACCAATGGGGAGTCGGACTCTGGCCTCAGTTCCTCTTAAGAGCCACACACCCAGTTTACCTTCACTCTATGCCTGTAATCTTCCCACAACGCACCAAAACTAATGCACATATTCACTCCGTCAATAAGCCAAACTTTCTTTGAGTCTGAGATGTTTTAGAGTATAATCATGTCAAAAGAATGATATTAAGGACAACGCTAGCTTCCACAAAGGCAGTATGTTTGCTGTATTTAGCCAATTTTCTGTATATTTGGGTGCAAAAAATGTGTATTTTGCCTAAATGCAAATATTTGTTTTATAATTCTTAATATTCTGTTGTATAAGAGGATCTTCAGCCTCAGATTTAGTATTTATTGATTTCTTTATCTGCAGAATGAGTTTAGAACATTTTTGTAATATAGTATTAGAATTTCATGAACAACAAAAATGCCTAATTCAAAATTCAAATTCATTTAAAGCTAGAAATAGCAATTTTATTTAATAGCTATTATTTTGACATTATTTACTAGCTAAAAGTAAGGCCTGTCTTATAAAAACAGACTTTGAGGGAATTTGTCTTTAAAATTACACTCATGAACATGCATATTATTATTGTTATCACTACTATATCCATCCACAGATTTACACTGATGGTTTCAGTGGAACAAAATTTAAACTTTTTATTCAGCTGTGCAATTCACTGTAAATGGGTGTATATTTGAATGAATGTGCCTCTGTAAACCTGTCTGATGTATGTGCTGCGGAGTGTCAGTGTGGTCTTGTCTCCCAGCATGCATTCATACTGCTTCCTCACTACAGGGCAGTGAAATCATGCATGTTTGCTGTTCAGTGCCACACTGGACTCCAGCAACTTGCTGTATGAATCCACACTCACTGGGGTGGGTGTCACTATACCAACATAGAACAGAACAACGCTCCGAGAGCCAGAATAAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process

KEGG:

id description
K18695 GPCPD1; glycerophosphocholine phosphodiesterase GPCPD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175348 lncRNA downstream 1065 5006497 ~ 5006977 (-) True G154445
TU175315 lncRNA downstream 17052 4986108 ~ 4990990 (-) False G154415
TU175345 lncRNA downstream 34078 4972971 ~ 4973964 (-) True G154442
TU175341 lncRNA downstream 41111 4966670 ~ 4966931 (-) True G154438
TU175340 lncRNA downstream 41443 4966281 ~ 4966599 (-) True G154437
TU175411 lncRNA upstream 123310 5144527 ~ 5144866 (-) True G154498
TU175413 lncRNA upstream 133302 5154519 ~ 5154881 (-) True G154500
TU175664 lncRNA upstream 241323 5262540 ~ 5262782 (-) True G154730
TU175665 lncRNA upstream 248634 5269851 ~ 5270384 (-) True G154731
TU175666 lncRNA upstream 249803 5271020 ~ 5271284 (-) True G154732
CI01000029_04997226_05004488.mRNA mRNA downstream 3107 4997226 ~ 5004935 (-) True CI01000029_04997226_05004488
CI01000029_04898116_04905715.mRNA mRNA downstream 102231 4897624 ~ 4905811 (-) True CI01000029_04898116_04905715
CI01000029_04881932_04882348.mRNA mRNA downstream 124307 4881845 ~ 4883735 (-) True CI01000029_04881932_04882348
CI01000029_04611378_04794476.mRNA mRNA downstream 213566 4611378 ~ 4794476 (-) True CI01000029_04611378_04794476
CI01000029_04577893_04580321.mRNA mRNA downstream 427068 4577683 ~ 4580974 (-) True CI01000029_04577893_04580321
CI01000029_05046771_05054238.mRNA mRNA upstream 25004 5046221 ~ 5054238 (-) True CI01000029_05046771_05054238
CI01000029_05055841_05068089.mRNA mRNA upstream 34168 5055385 ~ 5068127 (-) True CI01000029_05055841_05068089
CI01000029_05181056_05182090.mRNA mRNA upstream 159681 5180898 ~ 5182260 (-) True CI01000029_05181056_05182090
CI01000029_05186117_05187142.mRNA mRNA upstream 164644 5185861 ~ 5187312 (-) True CI01000029_05186117_05187142
CI01000029_05189829_05190863.mRNA mRNA upstream 168546 5189763 ~ 5191058 (-) True CI01000029_05189829_05190863
TU175317 other downstream 20617 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 20617 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 530830 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1300790 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 1721488 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 2149150 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 2345110 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 2345110 7366327 ~ 7369547 (-) False G156495

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036152 False 2366 mRNA 0.48 20 NC_007131.7 45669176 ~ 45709990 (-)