RNA id: TU175341


Basic Information

Item Value
RNA id TU175341
length 262
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G154438
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4966670 ~ 4966931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTACAGTGGTTCAACCTTAATGTTATAAAGCAATGATAATACATTTTGTGCGGCAAAAAAACATTATTTAACAATTTCCAGTGATAGGCGATTTCAAAACACTGCTTCATGAAGCTTTGAAGACTTACGAATCTTTTGTTTCGAATCAGTGGTTCGGAGCATATATCAAACTGCCAAAGTCACGTGATTTCAGTAAACGAGGCTTCGTTACCTAATAAGTCGTTATTTTGGTTTTTTTGGCACACAAAATGTATTTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175340 lncRNA downstream 71 4966281 ~ 4966599 (-) True G154437
TU175332 lncRNA downstream 10338 4956127 ~ 4956332 (-) True G154429
TU175331 lncRNA downstream 10546 4955834 ~ 4956124 (-) True G154428
TU175105 lncRNA downstream 112683 4842446 ~ 4853987 (-) True G154215
TU175108 lncRNA downstream 141490 4817780 ~ 4825180 (-) True G154218
TU175345 lncRNA upstream 6040 4972971 ~ 4973964 (-) True G154442
TU175315 lncRNA upstream 19177 4986108 ~ 4990990 (-) False G154415
TU175348 lncRNA upstream 39566 5006497 ~ 5006977 (-) True G154445
TU175411 lncRNA upstream 177596 5144527 ~ 5144866 (-) True G154498
TU175413 lncRNA upstream 187588 5154519 ~ 5154881 (-) True G154500
CI01000029_04898116_04905715.mRNA mRNA downstream 60859 4897624 ~ 4905811 (-) True CI01000029_04898116_04905715
CI01000029_04881932_04882348.mRNA mRNA downstream 82935 4881845 ~ 4883735 (-) True CI01000029_04881932_04882348
CI01000029_04611378_04794476.mRNA mRNA downstream 172194 4611378 ~ 4794476 (-) True CI01000029_04611378_04794476
CI01000029_04577893_04580321.mRNA mRNA downstream 385696 4577683 ~ 4580974 (-) True CI01000029_04577893_04580321
CI01000029_04514094_04517849.mRNA mRNA downstream 448821 4513850 ~ 4517849 (-) True CI01000029_04514094_04517849
CI01000029_04997226_05004488.mRNA mRNA upstream 30295 4997226 ~ 5004935 (-) True CI01000029_04997226_05004488
CI01000029_05008936_05021217.mRNA mRNA upstream 41111 5008042 ~ 5021217 (-) True CI01000029_05008936_05021217
CI01000029_05046771_05054238.mRNA mRNA upstream 79290 5046221 ~ 5054238 (-) True CI01000029_05046771_05054238
CI01000029_05055841_05068089.mRNA mRNA upstream 88454 5055385 ~ 5068127 (-) True CI01000029_05055841_05068089
CI01000029_05181056_05182090.mRNA mRNA upstream 213967 5180898 ~ 5182260 (-) True CI01000029_05181056_05182090
TU175091 other downstream 489458 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1259418 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 1680116 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 2373868 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 3672547 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU175317 other upstream 19177 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 19254 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 2203436 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 2399396 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 2399396 7366327 ~ 7369547 (-) False G156495

Expression Profile