CI01000029_05055841_05068089 (FERMT1)


Basic Information

Item Value
gene id CI01000029_05055841_05068089
gene name FERMT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5055385 ~ 5068127 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05055841_05068089.mRNA
AGTTTGTGTTTATCTGTGATTTGATTTCAGGCAGAATAATGGCCACTGCGGCTGAGTACGGACACAACTCCTGGGAACTCAGCATCCAGGTGGACCAGCGCGAGGGAGATGAGGGCATGAAGTTTAAATTGCGGGTCAAGGGGGATCTCCACGTCGGGGGTCTCATGCTCAAACTTGTGGAGAAGATCAAGGCTCCTCAGGACTGGTCCGATCATGCCATCTGGTGGGAGCAGAAGAGCTGCTGGCTGCTGAAGACTCACTGGACTCTGGATAAGTATGGAGTCCAGGCGAACGCTGACCTGCGCTACACTCCACAACACAAACCCCTCTGTATCCAGCTGCCCAACATGAAGACCATCAGGCTCCCTGTTAGCTTCTCTGGTGTGGTCTTCAGAGCCGTGGTTGAAATCTGCAAAGCACTCAACATTAGAAGATCTGAAGAACTTTCTCTTCTGAAACCACTAGATGATCCAAAGAAGAAAAAGAAAAAAGAAAAGGCCACAGAATCAGCCATTGATGATATATTAAACATGGACATCGCCAGCGGAATGGCAGGAGGAGCCCTTGGTCTGTACAGTAAAACTATGACTCCAACCTACGACCCGGAGAGCGGCTCTCCTGCATCGTCCACCAGTCTGTGGTTCGGAGACAGTCCCCTGACGGCCAGCCAGCCCAACCTTCCACCAGAGGAACTGGCCAAACTGTACAAGCCTCTTACTATGGAGGATAAAGCAGCCATTAATGCTGGGTGGCTGGATTCCTCTCGCTCACTGATGGAACAAGGAATTCAGGAAAACGACAGACTCCTGCTGCGATTCAAGTACCACTGCTTCTTTGACCTCAACCCAAAGTATGATGCTGTGAGAATCACACAGTTGTATGAACAGGCCCGATGGGCCATACTGCTGGAGGAGATCGACTGCACTGAAGAAGAGATGATCATGTTTGCATCCCTGCAGGAAGATATCACTGATATTCCAAAGCTGGAAGATACACTTAAACTGTTTAGGCCCAAACGATTGACGTTAAAGCCATATAAGGAGTACTGGTTTGTTTTTAGGGACACCACCATATCTTATTTCAAAAACAAAGAGTCTGCCAATAAAGAGCCCATTGAGCAACTCCATCTACGAGGATGTGAGGTCATTCCTGATGTCAACGTCACTGAGAGGAAGTTCGGCCTTAAGCTGTTATTGCCAGCAGCTGACGGAATGAACGAGGTTTATATTCGCTTTGACAATGAGACGCAGTACGCCAAGTGGAAAGCTGCCTGTATTTTGGCCTCTAAAGGAAAGACGATGGCCTACAGCTCGTACCGCACCGAGGTGAAGAACATCCAGTCTTTCCTGCAGATGAAGAGTCTAGCGCCCCCTCCTGGCCAGGCAGCACCTGACGTAGAGTCCATGGAGATGAATGCCGAGTGCTTCGTTTCTCCCCGATATGCAAAGAAATACAAGACCAAACAGCTGACCACACGAATCTTGGAGGCCCTTCACAATATTTCCCACCTTTCCCTCATGGAGGCTAAAATGCGTTTTATCCAAGCTTGGCAGTCCCTGCCCGAATTTGGCATCAAGTACTATATCGTGAGATTCAGAGGTAGCAAGAAAGATGAGCTCCTGGGAATTTCCTCCAACAAGCTGATCCGCATCGACATGTCGACTGGTTTGCCGGTGACCACCTGGAGGTTCTCCAACATGAAACAATGGAACGTCAACTGGGAGATTAAACAGGTAGCCATTGAGTTTGACCAGAGCATGTCTATTGCGTTCTCCTGCCAGAGCTGCGACTGCAAAGTGGTTCACGAGTATATCGGAGGATACATTTTCCTTTCAACGCGCTCAAAAGACCAGAATGAAACATTAGATGAAGAACTCTTCCACAAACTCACAGGAGGACAAGACTGACCTTAAATCAACACGTCAGGACTCTGACATGGCCCTTAGTGTTGCAGAAAAGCAATTTGTATAGTTTTTTAAATCTGCAAATATAAAAGTTGTTTTATATTTGTATTAAGACACACACAAGCCTTGTGCTCAAAACAGAAAAGAAATCAGATTATTCAATCCATATTTTGGATCTGATACAATACATTTGCTGACTCTTGACATCTCTATGAGTTGTTTTTGCATCTGAACAATATACAAAATTTACAGTGCACATTTCCATACAAGAATTTGTGTGATAGATATGGGATACAGTAAGGTTACGGTGGGGTTTGAATTTGAATTGTAGGTTTCTTTGAAGTTGTGTACTAACGAAGTGCTTTCTACATTTTTTGAATGTTTGAATGTTAAATGAGTTTACATTAAATGCATCACCAAAATATCCAGGTGCTTTTGGCTTGTTTTCTGGAAAATAAA

Function

symbol description
fermt1 Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to act upstream of or within integrin-mediated signaling pathway. Predicted to be active in focal adhesion. Is expressed in several structures, including intestinal epithelium; median fin fold; non neural ectoderm; pectoral fin bud; and pectoral fin fold. Human ortholog(s) of this gene implicated in Kindler syndrome; telangiectasis; and vesiculobullous skin disease. Orthologous to human FERMT1 (FERM domain containing kindlin 1).

GO: NA

KEGG:

id description
K17082 FERMT1, KIND1; kindlin 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05055841_05068089.mRNA True 2363 mRNA 0.46 13 5055385 5068127

Neighbor

gene id symbol gene type direction distance location
CI01000029_05046771_05054238 TRMT6 coding downstream 1147 5046221 ~ 5054238 (-)
CI01000029_05008936_05021217 GPCPD1 coding downstream 34168 5008042 ~ 5021217 (-)
CI01000029_04997226_05004488 NAPB, NAPBA coding downstream 50450 4997226 ~ 5004935 (-)
CI01000029_04898116_04905715 TRIB2 coding downstream 149574 4897624 ~ 4905811 (-)
CI01000029_04881932_04882348 NA coding downstream 171650 4881845 ~ 4883735 (-)
CI01000029_05181056_05182090 TAAR12J coding upstream 112771 5180898 ~ 5182260 (-)
CI01000029_05186117_05187142 TAAR12J coding upstream 117734 5185861 ~ 5187312 (-)
CI01000029_05189829_05190863 TAAR12H, TAAR12J coding upstream 121636 5189763 ~ 5191058 (-)
CI01000029_05205497_05206423 TAAR12E, TAAR12F, TAAR12J coding upstream 137342 5205469 ~ 5207463 (-)
CI01000029_05208608_05209357 TAAR12E, TAAR12F, TAAR12J coding upstream 139513 5207640 ~ 5209523 (-)
G154445 NA non-coding downstream 48408 5006497 ~ 5006977 (-)
G154415 NA non-coding downstream 64395 4986108 ~ 4990990 (-)
G154442 NA non-coding downstream 81421 4972971 ~ 4973964 (-)
G154438 NA non-coding downstream 88454 4966670 ~ 4966931 (-)
G154437 NA non-coding downstream 88786 4966281 ~ 4966599 (-)
G154498 NA non-coding upstream 76400 5144527 ~ 5144866 (-)
G154500 NA non-coding upstream 86392 5154519 ~ 5154881 (-)
G154730 NA non-coding upstream 194413 5262540 ~ 5262782 (-)
G154731 NA non-coding upstream 201724 5269851 ~ 5270384 (-)
G154732 NA non-coding upstream 202893 5271020 ~ 5271284 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 578173 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 1348133 3698572 ~ 3707883 (-)
G153891 NA other downstream 1768831 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 2462583 2587549 ~ 2592379 (-)
G156542 NA other upstream 2102240 7170367 ~ 7170951 (-)
G156495 NA other upstream 2298200 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location