CI01000029_05008936_05021217 (GPCPD1)


Basic Information

Item Value
gene id CI01000029_05008936_05021217
gene name GPCPD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5008042 ~ 5021217 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05008936_05021217.mRNA
ATGGCCAAAGTGGGCTTTGTTTTTCCAAAATCTGTCCATAATCTTAACCCCCATTTGGAATTACAGAATGCTGGTGGGCCATGTCAAGTCATAGTCAATAGATGGGAGACCCATCAGCTGCCACGCTCATTGAGTCCCTCAGTGTTATTTGTCATGGACAGATGTAAGATGTCAGCATTTCTTTGTGCTTGTGTTGCCACAAAAACAATTTGCTTGCATGAACCAGAGCATGTGATTGACGATGGACATTTTGGAGTCCATAATGGTGTTGAGTGTGTGGACTCTGGGTGGTTGACGGGCCAGACAGAAATTCGTCTCAGGCTTCATTACTCCGTGAAACCTCCAGTATCTATTACTAAGAAAAAATTTAAGAAGTCACGCTTCAGATTGAAGTTGATGCTGGAAGGAATTGAAGAAGAAGACGACGAAGAAGAAGAAAGCCCTTCATCATGGCATAAGATGACCACTACGCTGGAGATCAGTATGATCAGTGATGGCGGATATAAGTCTCGTCATTCCCAGCCAGAATGTGGATACGCTCTGGAACCCTCCAAGTGGACAGAATACATTATTCACACCATGGACCCTGACAACCTAGAGCTCACCTTTGAGTTCTTTGAGGAGGACTTGAGTGAACCTGTGGTTCAGGGTGATGCTCATCCAGGCCACGTAGGCACCGCATGCCTCTTGTCATCCTCTTTTGTGGAGAACGGAAAAGATTTGGGTGTAGTCACCCTGCCCATCATGAGTCGAAACGCCAGACAGACTATTGGAAAAGTCAGAGTGGATTACCTGGTGACGCGTCCTATCCAAGGCCTTCAATGTGACATGAGTCAGTCTTTCACCAAATACTGGAAGAAAAGGAGCCCTTTGGTTGTTGGACACAGAGGAGCAGGGAGCACACATGCTGCCAGGCATCACAAGATCAGGGAAAACACAATTGCCTCATTTCTGAGTGCAGCCAACCATGGAGCCGCTTATGTAGAGTTTGATGTTCATTTGTCTAAAGATTTAGTTCCAATCGTGTATCACGACCTCACCTGCTGTATTTCAACTAAAAAGAAAAATGACAAGAATTCAATGGTATTGTTCGAAGTTCCCGTCAAGGATCTTACGTTTGACCAACTTCAGCTTTTAAAACTGGACCATACAACTGCCATGGAAGTTCATGACCATAAAGACTTGCAGGATGAAGAAGAATATATAGATGAGCACCAGCCTTTCCCTTCCCTTTCACAGATATTCCAGGCTGTTCCAGATCATGTGGGATTCAACATTGAGCTGAAGTGGATCTGTCAGTTTAAGGATGGCTCCTGGGATGCAAAGCTCTCTACCTACTTCAACATGAATCAGTTCTTGGACATCATCCTCACATGCGTGCTGCAGAATGCCGGCAAGAGGAGGATAGTCTTCTCATGCTTTGATCCTGATGTTTGCACAATGGTGAGGCAAAAGCAGAACAAATACCCTATCCTGTTTCTGACCCAAGGAGTGACAGACCTCTACCCTGAACTAATGGACATCCGCTGTCAGAGCACTAAGATCGCAATGAGCTTTGCTCAGAGTGAGAACATACTGGGAATCAGCGCCCACACTGATGAGCTCTTGAGGAACATGGAGTTCATCAGAGAGGCTCAGTCCAAGGGACTAGTGGTCTTCTGCTGGGGCGACTATAACAACGACCATGAGAACAGGATGAAGCTGAGGGACCAGGGCATTGATGGACTCATATATGACAGAATCTGTGATGACAAGCTTGAGCAGTCAAACATTTTCAATGTAGAGGAACAGGTTTCTCTCAAGGATGTCATCCAAACATGCGCCTGTTCCACCTACAGCATTCCGTGCTCCTCCATTCCTTGTGCAGGAAAATCCCAGGAGACCAATGGGGAGTCGGACTCTGGCCTCAGTTCCTCTTAAGAGCCACACACCCAGTTTACCTTCACTCTATGCCTGTAATCTTCCCACAACGCACCAAAACTAATGCACATATTCACTCCGTCAATAAGCCAAACTTTCTTTGAGTCTGAGATGTTTTAGAGTATAATCATGTCAAAAGAATGATATTAAGGACAACGCTAGCTTCCACAAAGGCAGTATGTTTGCTGTATTTAGCCAATTTTCTGTATATTTGGGTGCAAAAAATGTGTATTTTGCCTAAATGCAAATATTTGTTTTATAATTCTTAATATTCTGTTGTATAAGAGGATCTTCAGCCTCAGATTTAGTATTTATTGATTTCTTTATCTGCAGAATGAGTTTAGAACATTTTTGTAATATAGTATTAGAATTTCATGAACAACAAAAATGCCTAATTCAAAATTCAAATTCATTTAAAGCTAGAAATAGCAATTTTATTTAATAGCTATTATTTTGACATTATTTACTAGCTAAAAGTAAGGCCTGTCTTATAAAAACAGACTTTGAGGGAATTTGTCTTTAAAATTACACTCATGAACATGCATATTATTATTGTTATCACTACTATATCCATCCACAGATTTACACTGATGGTTTCAGTGGAACAAAATTTAAACTTTTTATTCAGCTGTGCAATTCACTGTAAATGGGTGTATATTTGAATGAATGTGCCTCTGTAAACCTGTCTGATGTATGTGCTGCGGAGTGTCAGTGTGGTCTTGTCTCCCAGCATGCATTCATACTGCTTCCTCACTACAGGGCAGTGAAATCATGCATGTTTGCTGTTCAGTGCCACACTGGACTCCAGCAACTTGCTGTATGAATCCACACTCACTGGGGTGGGTGTCACTATACCAACATAGAACAGAACAACGCTCCGAGAGCCAGAATAAA

Function

symbol description
gpcpd1 Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in cytoplasm. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process

KEGG:

id description
K18695 GPCPD1; glycerophosphocholine phosphodiesterase GPCPD1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05008936_05021217.mRNA True 2814 mRNA 0.43 18 5008042 5021217

Neighbor

gene id symbol gene type direction distance location
CI01000029_04997226_05004488 NAPB, NAPBA coding downstream 3107 4997226 ~ 5004935 (-)
CI01000029_04898116_04905715 TRIB2 coding downstream 102231 4897624 ~ 4905811 (-)
CI01000029_04881932_04882348 NA coding downstream 124307 4881845 ~ 4883735 (-)
CI01000029_04611378_04794476 KLHL29 coding downstream 213566 4611378 ~ 4794476 (-)
CI01000029_04577893_04580321 NA coding downstream 427068 4577683 ~ 4580974 (-)
CI01000029_05046771_05054238 TRMT6 coding upstream 25004 5046221 ~ 5054238 (-)
CI01000029_05055841_05068089 FERMT1 coding upstream 34168 5055385 ~ 5068127 (-)
CI01000029_05181056_05182090 TAAR12J coding upstream 159681 5180898 ~ 5182260 (-)
CI01000029_05186117_05187142 TAAR12J coding upstream 164644 5185861 ~ 5187312 (-)
CI01000029_05189829_05190863 TAAR12H, TAAR12J coding upstream 168546 5189763 ~ 5191058 (-)
G154445 NA non-coding downstream 1065 5006497 ~ 5006977 (-)
G154415 NA non-coding downstream 17052 4986108 ~ 4990990 (-)
G154442 NA non-coding downstream 34078 4972971 ~ 4973964 (-)
G154438 NA non-coding downstream 41111 4966670 ~ 4966931 (-)
G154437 NA non-coding downstream 41443 4966281 ~ 4966599 (-)
G154498 NA non-coding upstream 123310 5144527 ~ 5144866 (-)
G154500 NA non-coding upstream 133302 5154519 ~ 5154881 (-)
G154730 NA non-coding upstream 241323 5262540 ~ 5262782 (-)
G154731 NA non-coding upstream 248634 5269851 ~ 5270384 (-)
G154732 NA non-coding upstream 249803 5271020 ~ 5271284 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 530830 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 1300790 3698572 ~ 3707883 (-)
G153891 NA other downstream 1721488 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 2415240 2587549 ~ 2592379 (-)
G156542 NA other upstream 2149150 7170367 ~ 7170951 (-)
G156495 NA other upstream 2345110 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location