CI01000029_03698769_03707177


Basic Information

Item Value
gene id CI01000029_03698769_03707177
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3698572 ~ 3707883 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_03698769_03707177.mRNA
ACTATTGTTTGCCTTGTTAGCTTATTTTGATGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCCAAATCTTGATTACACTAGTTTTTTTTTTCTTCTCATGGTTGCTTGGCTCAATGTTTACAATAACAAAATTAGGCTGTTCTGTTTGTGTATTGAGTATGGCTCCTAGTCCCTCTGTTGATAATTAATGATTATCTAATGACACTAATGATTTGTGACTGATGATATATTTTTTTTTAGGACTGAATTGATATGTATTTAATTTCATTATTTAAAATCTGTATTAAAATATTGAAATTAAATACTTTATTTACTTGTTTCTTAATAACCAGCATTTAGTTTTGCTTTAATCAGTTGCTTTATAATTGATGACTTTCTCCACTTATCCTTTTGTCTCTACTTTATTTTTCATAGTTCTTCTCAATGCAATTTTAGTACCAAACCATCTTAATGTGAAATAAAACCAATGATGTTAATCAAAAAAGAAAAAAAGTCCTGCTCTGATAAATCATGTGATCAGAAACAGTAACGGTGTGTTCAAACACTCTGATCGACAAACACTATTTGACCTAGTCCATGTCCTTGTAAGGACAATGATTGACTGATGAATGACGGTCCTATGATGTTTGTTGTACTGACATGCTTAAAGAATTGAAAAGTCCCTGCCTGTCAATGCCCCAACATGAAGGTTTACAAAACAGTTCTTTTACTAGGTTTATTCCTTTTAACAGGTTTCCTCAGGGGCCAGACCCAAAGCACAGATGTTCTGGAAGCGTATATTAAAACGGATGGGGCCTGGATAGTGAAATTGCCTAAAGTTCAATACAGTGTGAAAACAGTGGAAGAATGTGCCGTCAAGTGCAACAAAGAGACTTCCTTTACATGCAGGTCCTTTTTGTACATTGAAAAAGATCAGGATTGCGTAACATTACCTGCTAACTCAAAAACTGATCAGATACTGCGAAGAATGAGTGCTGCTCTCTATGAGAAAAAGGAACGTGCAAGTGAAGCATCCAAACAGGAGCGAGAGGTTTCTAAGATTATTAAGGGGCCAACTGGAACTGACATCGCTCTTCTCAAGTTGGACAGGCCTGCATTAATAAACGATAAGGTATTGCCTGCGTGCCTACCAGAAAAGGACTACATTGTACCAAGCAATACTGAATGCTATGTGACAGGCTGGGGGGAGACACAGGGAACCGGTGGAGAAGGTTTCCTGAAAGAAACCGGCTTCCCTGTAATTGAGAACAAAGTCTGCAACCGTGCATCTTTTCTGAATGGCCGCGTGAAGGAGCATGAGATGTGTGCAGGAAACATAGAAGGTGGAACTGACAGTTGCCAGAACACCTTCGTCCTTCAGGGAGTGACATCATGGGGTCTCGGCTGTGCTAATGCCATGAAACCTGGAGTGTATACCCGCGTCTCCAAGTTTGTCGACTGGATAGAAAGCCATATTAAACCAATCTGAGAATTAGTCAGATAAGTCCAATGATGTGCAATGGAATTTAAGTGAACAACTCAAAGTAATGAAATTTTATTGATGCATAAGCTGTTTTAAAGACCCTGTTCAGAAGTTCAGTTTTACAAACGGTCAAGCCCACTGTCAGTCTGTACGGTTATATGCACACGCCGGATGTGTTCCAGTTTGAGGCAGTCCCCATTAAA
>TU174823
AATGACGGTCCTATGATGTTTGTTGTACTGACATGCTTAAAGAATTGAAAAGTCCCTGCCTGTCAATGCCCCAACATGAAGGTTTACAAAACAGTTCTTTTACTAGGTTTATTCCTTTTAACAGGTTTCCTCAGGGGCCAGACCCAAAGCACAGATGTTCTGGAAGCGTATATTAAAACGGATGGGGCCTGGATAGTGAAATTGCCTAAAGTTCAATACAGTGTGAAAACAGTGGAAGAATGTGCCGTCAAGTGCAACAAAGAGACTTCCTTTACATGCAGGTCCTTTTTGTACATTGAAAAAGATCAGGATTGCGTAACATTACCTGCTAACTCAAAAACTGATCAGATACTGCGAAGAATGAGTGCTGCTCTCTATGAGAAAAAGGGTAAGATTTTATAGCCCCATCTATTTTATCACTTAACAGATTTTAAAGTTTAAAAGCAGATGATGGT

Function

NR:

description
Plasminogen

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_03698769_03707177.mRNA False 1689 mRNA 0.38 8 3698572 3707883
TU174823 True 455 TUCP 0.39 4 3706223 3707252

Neighbor

gene id symbol gene type direction distance location
CI01000029_03625037_03636215 RFX6 coding downstream 61539 3624704 ~ 3637033 (-)
CI01000029_03590053_03594170 VGLL2, VGLL2A coding downstream 103668 3589653 ~ 3594904 (-)
CI01000029_03534096_03563671 NA coding downstream 134901 3534052 ~ 3563671 (-)
CI01000029_03503783_03509429 NUS1 coding downstream 189143 3503663 ~ 3509429 (-)
CI01000029_03397097_03444565 SLC35F1 coding downstream 254007 3396139 ~ 3444565 (-)
CI01000029_03723621_03726874 NA coding upstream 15304 3723187 ~ 3727070 (-)
CI01000029_03746973_03752660 PLG coding upstream 39053 3746936 ~ 3752660 (-)
CI01000029_03769171_03775841 UNC93A coding upstream 60904 3768787 ~ 3775841 (-)
CI01000029_03799874_03822017 NA coding upstream 91972 3799855 ~ 3822181 (-)
CI01000029_03925339_03926640 NA coding upstream 217282 3925165 ~ 3926668 (-)
G154047 NA non-coding downstream 10102 3688227 ~ 3688470 (-)
G154046 NA non-coding downstream 10444 3687852 ~ 3688128 (-)
G154040 NA non-coding downstream 64029 3633985 ~ 3634543 (-)
G154017 NA non-coding downstream 124116 3574064 ~ 3574456 (-)
G153952 NA non-coding downstream 340217 3348381 ~ 3358355 (-)
G154057 NA non-coding upstream 28348 3736231 ~ 3740719 (-)
G154137 NA non-coding upstream 294293 4002176 ~ 4002475 (-)
G154140 NA non-coding upstream 348854 4056737 ~ 4057258 (-)
G154144 NA non-coding upstream 354299 4062182 ~ 4062422 (-)
G154146 NA non-coding upstream 356689 4064572 ~ 4064850 (-)
G153891 NA other downstream 412018 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 1105770 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2404449 1292249 ~ 1294123 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 752460 4460159 ~ 4463540 (-)
G154415 NA other upstream 1278225 4986108 ~ 4990990 (-)
G156542 NA other upstream 3462484 7170367 ~ 7170951 (-)
G156495 NA other upstream 3658444 7365007 ~ 7371921 (-)

Expression


Co-expression Network