CI01000029_01293143_01293964 (BATF3)


Basic Information

Item Value
gene id CI01000029_01293143_01293964
gene name BATF3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1292249 ~ 1294123 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_01293143_01293964.mRNA
ACAGCCTCGTAATTTGCTTTAATTTTCTATCTAGTTTAGTGGACGTAAATCTTCATTGTGCGCGTGCTCTCCTGCACCTGCCATGTCACTTTTCAATGCGACAAGTAACTTTACTCGAAGTGATGCTCCAGCTTTACGGTTGTTTCGAAAGAGTGAGAGCTCTGATGATGATGAGAAAAGGTTGAAAAGAAGAGAAAAGAACCGAGTTGCTGCCCAGAGAAGCCGCAAAAGACAAACCCAGAGAGCTGACGAGTTGCACGAGGCGTATGAGTGTCTGGAACAGGAGAACAGCCTGCTGAGGAAGGAAGTCCAGCTTTTGATAGAGGAACAGCAACGCTTAACAGATGCCCTCAAAGCCCATGAGCCTTTGTGCCCTGTCTTGAACTGTGGTATGACCTCAACAACAAGGTCCACAGGCACAGTGCCACAAGACATTCACATCTGATGCTCATGATGTCGGAATTTCCATTTAAGGATAAATTAAGCTAATTATCTTTAATACAAGTGATTCGTGCATACTAGCGGCATGCAGTTTTTATGCTTTTTATTCTAAAGTATTAACCCGTGAGTTCAGTATCCGTTAACATGCAGTTGAATTAATTATTCATGCTCGAACTTTCTCTTTTGCGTTTTTGACAGGTTTCGTTCAGAATACAGAATCTCTAGTCATATGTTACTTTTCCCAGGGCCATGCCTCACGTGAATACTTCCACTTTTGGTATTTACTGAGATAGAGTAAATAACCACTAACTAAACCATCTGTTATACCACAGTTAGTGGACTGTGAATGAACAACATGCGAGAATGGACTTCTGCTTTATGAGAGCCTATCCGACCAAAATACTAAAGGTTAGTTTCAAAACTCTGTTACAGCCGCTTTGTTATGGCTGCACTATTACAAATAACCACAAATGGCAGTGTTACTATTCTGTCTTGCTTGGTCATGTTTTGCTGTGGGTATGTATTGTAAGTAGAAGAATAATTTTATTTTAATAAAAAGGAATTACTCTGTTTATACACTCTGTGACGCAGATGCAGATTAAA
>TU173481
CATTTTCAAGAAATCACTAATGTCACTGTAGCACGTTGACTGACAGTTTAAAAATGGATAACTTTGCGCTAATTAACACAGCCTCGTAATTTGCTTTAATTTTCTATCTAGTTTAGTGGACGTAAATCTTCATTGTGCGCGTGCTCTCCTGCACCTGCCATGTCACTTTTCAATGCGACAAGTAACTTTACTCGAAGTGATGCTCCAGCTTTACGGTTGTTTCGAAAGAGTGAGAGCTCTGATGATGATGAGAAAAGGTTGAAAAGAAGAGAAAAGAACCGAGTTGCTGCCCAGAGAAGCCGCAAAAGACAAACCCAGAGAGCTGACGAGTTGCACGAGGCGTATGAGTGTCTGGAACAGGAGAACAGCCTGCTGAGGAAGGAAGTCCAGCTTTTGATAGAGGAACAGCAACGCTTAACAGATGCCCTCAAAGCCCATGAGCCTTTGTGCCCTGTCTTGAACTGTGGTATGACCTCAACAACAAGGTCCACAGGCACAGTGCCACAAGACATTCACATCTGATGCTCATGATGTCGGAATTTCCATTTAAGGATAAATTAAGCTAATTATCTTTAATACAAGTGATTCGTGCATACTAGCGGCATGCAGTTTTTATGCTTTTTATTCTAAAGTATTAACCCGTGAGTTCAGTATCCGTTAACATGCAGTTGAATTAATTATTCATGCTCGAACTTTCTCTTTTGCGTTTTTGACAGGTTTCGTTCAGAATACAGAATCTCTAGTCATATGTTACTTTTCCCAGGGCCATGCCTCACGTGAATACTTCCACTTTTGGTATTTACTGAGATAGAGTAAATAACCACTAACTAAACCATCTGTTATACCACAGTTAGTGGACTGTGAATGAACAACATGCGAGAATGGACTTCTGCTTTATGAGAGCCTATCCGACCAAAATACTAAAGGTTAGTTTCAAAACTCTGTTACAGCCGCTTTGTTATGGCTGCACTATTACAAATAACCACAAATGGCAGTGTTACTATTCTGTCTTGCTTGGTCATGTTTTGCTGTGGGTATGTATTGTAAGTAGAAGAATAATTTTATTTTAATAAAAAGGAATTACTCTGTTTATACACTCTGTGACGCAGATGCAGATTAAAATCCAGTATTACTTCAATTGTAATAGTGATACAATTTCTATTAAAATGAGGTCACCAAATCAGAAAAGGGCTAAATGTGTAGTTTTTTTCCTCTCTCATTTGTGTTGAAACCATATCTGGGGGTGGTTGCGGTAAAAATGGTGGTCAGATTTTTTTCTTGAATGTATCACTTCCTCAAACCCCCATGGACTTACCTTCCTAACCAGTGCCGGGTACACACTTCTATATTTCTCTTCCAGTTTTCTCTTCTCTTCTGAAAAGTCCTAGAGTTCCACATGGATCTGTTGACTTTCGT

Function

symbol description
batf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human BATF3 (basic leucine zipper ATF-like transcription factor 3).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09034 BATF; ATF-like basic leucine zipper transcriptional factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_01293143_01293964.mRNA False 1044 mRNA 0.40 3 1292544 1294046
TU173481 True 1416 TUCP 0.40 3 1292249 1294123

Neighbor

gene id symbol gene type direction distance location
CI01000029_01252971_01257256 NA coding downstream 35288 1252799 ~ 1257256 (-)
CI01000029_01245770_01245984 NA coding downstream 46560 1245518 ~ 1245984 (-)
CI01000029_01198414_01198698 NA coding downstream 93050 1198345 ~ 1199494 (-)
CI01000029_01186343_01189865 NA coding downstream 101897 1176769 ~ 1190647 (-)
CI01000029_01123207_01149937 NA coding downstream 141607 1122933 ~ 1150937 (-)
CI01000029_01294841_01297423 NA coding upstream 678 1294724 ~ 1297423 (-)
CI01000029_01353955_01354599 NA coding upstream 59782 1353536 ~ 1354599 (-)
CI01000029_01576996_01590356 ITPKB coding upstream 282293 1576339 ~ 1592127 (-)
CI01000029_01600901_01604213 NA coding upstream 306686 1600732 ~ 1605205 (-)
CI01000029_01645824_01650080 NA coding upstream 351669 1645715 ~ 1650080 (-)
G152759 NA non-coding downstream 211264 1078258 ~ 1081280 (-)
G152551 NA non-coding downstream 640776 649876 ~ 651768 (-)
G152557 NA non-coding downstream 766655 525587 ~ 525889 (-)
G152556 NA non-coding downstream 767307 524840 ~ 525237 (-)
G152918 NA non-coding upstream 145463 1439509 ~ 1439718 (-)
G152933 NA non-coding upstream 160746 1454792 ~ 1455019 (-)
G152935 NA non-coding upstream 162919 1456965 ~ 1457196 (-)
G152939 NA non-coding upstream 171121 1465167 ~ 1465472 (-)
CI01000029_02589994_02592379 NA other upstream 1298120 2587549 ~ 2592379 (-)
G153891 NA other upstream 1954731 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 2412177 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 3166297 4460159 ~ 4463540 (-)
G154415 NA other upstream 3692062 4986108 ~ 4990990 (-)

Expression


Co-expression Network