CI01000029_04460778_04463540 (FKBP1B)


Basic Information

Item Value
gene id CI01000029_04460778_04463540
gene name FKBP1B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4460159 ~ 4463540 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04460778_04463540.mRNA
ATCACAAGAGCTCAGATTCCGCAGGAGATTTTGATAAGCGCAGAAGCGCTCCCTCTGATGGGGATGCTGCAGAATGGAAAGAAGTTTGACTCGTCACGAGACAGAAACAAGCCCTTTAAATTCAAGATCGGCCGACAGGAAGTCATCAAGGGCTGGGAGGAAGGAGTTGCACAGATGAGTTTGGGTCAGCGGGCGAAGATCACCTGCACCCCAGACATGGCTTATGGGGCCACGGGACACCCTGGTGTCATTCCTCCCAACGCCACTCTTGTATTTGATGTGGAGCTGCTGAAACTGGAGTGAACCACTAGCTTTTACAGGGCTGAAGTCCTCAAACGGAGAAGGAAAAACACTAGTCCTCGCCCCACCAACAAAACCTTCTTCATCTAAACACTCTAGGCATCATCTTTTATGCAATATTTAGACACTGTTTAGTTACTTTAAATCTTTTCTACACACAACCTTAACACTATTTTGGCATCACGTTTTCATTTCGCTACATGCTAAGTGTTTTGTTTTTATTTTATAAATGTAGTATTTTCATACTACATTTTTTTCCGAAAATATGTGAATACAATAGAATCATTAAATCAGTATTTTAATTTGTACCAGACTGAATCCACTGCCTTACTGAATTTAGTAGGGTTAGTATTTTACAGAAGGGTATAATTCTGTATTCTGAGGGGCATTAACAACCACTGTCTGCATTGCCACTTTTGATAAAAGTATATCCTGCTGAATGCATATGATAGAATGATAATGTTACTGTATTTACTATATATTTTATATATAAATCTGTCCCTTATAAACATTAGCTGTAAGTCTCATTCAGATCTATTACAATGAGACGTGGAACAAACTGAATATGTATGATGGAGTGCTTTGGCTTTAATGAACATTTTATCAACTTGCTCTTAATAAA

Function

symbol description
fkbp1b Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; cranial ganglion; and myotome. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to several human genes including FKBP1B (FKBP prolyl isomerase 1B).

GO:      GO:0032513, GO:0019227, GO:0006457, GO:1903779, GO:0051284, GO:0006458, GO:0051280, GO:0005789, GO:0034704, GO:0061077, GO:0044325, GO:0051775, GO:0086064, GO:0030018, GO:0030073, GO:0005737, GO:0000413, GO:0042098, GO:0019855, GO:0016020, GO:0051209, GO:0033017, GO:0002027, GO:0005528, GO:0035584, GO:0048680, GO:0003755, GO:0010881, GO:0005219, GO:0006939, GO:0014808, GO:0060314, GO:0060315, GO:0022417, GO:0042026, GO:0061179, GO:0010033, GO:0043231, GO:0010459, GO:0030551, GO:0016853, GO:0034220, GO:0051480, GO:0005829, GO:0042542, GO:0007204, GO:0009749, GO:0016529, GO:0033197, GO:0005515, GO:0010880, GO:0005102

KEGG:

id description
K09568 FKBP1; FK506-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04460778_04463540.mRNA False 922 mRNA 0.39 3 4460159 4463540

Neighbor

gene id symbol gene type direction distance location
CI01000029_04433110_04458444 MUT coding downstream 1715 4433054 ~ 4458444 (-)
CI01000029_04272476_04278373 RUNX2A, RUNX2 coding downstream 181178 4271586 ~ 4278981 (-)
CI01000029_04246988_04247383 RUNX2B coding downstream 211108 4245107 ~ 4249051 (-)
CI01000029_04144327_04203475 MARK3B, MARK3 coding downstream 256684 4144327 ~ 4203475 (-)
CI01000029_04138798_04141675 LAPTM4A, LAP4A coding downstream 318484 4138798 ~ 4141675 (-)
CI01000029_04485919_04510826 MFSD2B coding upstream 22379 4485919 ~ 4510826 (-)
CI01000029_04514094_04517849 UBXN2A coding upstream 50310 4513850 ~ 4517849 (-)
CI01000029_04577893_04580321 NA coding upstream 114143 4577683 ~ 4580974 (-)
CI01000029_04611378_04794476 KLHL29 coding upstream 147838 4611378 ~ 4794476 (-)
CI01000029_04881932_04882348 NA coding upstream 418305 4881845 ~ 4883735 (-)
G154209 NA non-coding downstream 33191 4424924 ~ 4426968 (-)
G154239 NA non-coding downstream 50663 4409278 ~ 4409496 (-)
G154238 NA non-coding downstream 51360 4408581 ~ 4408799 (-)
G154234 NA non-coding downstream 57098 4402831 ~ 4403061 (-)
G154198 NA non-coding downstream 64409 4395419 ~ 4395750 (-)
G154229 NA non-coding upstream 60474 4524014 ~ 4529646 (-)
G154216 NA non-coding upstream 202815 4666355 ~ 4722192 (-)
G154230 NA non-coding upstream 213282 4676822 ~ 4682438 (-)
G154224 NA non-coding upstream 228416 4691956 ~ 4694050 (-)
G154221 NA non-coding upstream 289458 4752998 ~ 4757552 (-)
CI01000029_03698769_03707177 NA other downstream 752907 3698572 ~ 3707883 (-)
G153891 NA other downstream 1173605 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 1867357 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 3166036 1292249 ~ 1294123 (-)
G154415 NA other upstream 522568 4986108 ~ 4990990 (-)
G156542 NA other upstream 2706827 7170367 ~ 7170951 (-)
G156495 NA other upstream 2902787 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G153640 NA non-coding NC_053126.1 CM020923.1 10169942 ~ 10235939 (+)