CI01000029_04514094_04517849 (UBXN2A)


Basic Information

Item Value
gene id CI01000029_04514094_04517849
gene name UBXN2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4513850 ~ 4517849 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04514094_04517849.mRNA
ATGAATTATTCAGGAAGCATCGATGCAGTGGTTACATTTACTTGCACCATCCCTTATAACTTATATATGCCCGCATATGTTTGTGTTGCAAGATGGACAACAGAAGACGTCATGATGAAAGATATTGATTCAAGAGAAAGGGTTCAAGATGACACATGGTTTAAAGGGGCACAAAATGATGAAGAGGAGGATGAGGAGGAGCCAAGCCCTATTAGATCCAGTTTCTCCGTCGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTCGCCAGTAGCGGCAAAAAGGTGGAGATTGTAGTAAGACTGTGGAAAAATGGCTTCACTGTAAACGATGAAGATTTGCGCAGTTACACCCTAGAGGAAAACCAAGAGTTCTTGGAGGCCATTAAAAGAGGTGAGCTGCCTCTGGAGCTAGAAGGAAGAGCCGAGGATGAAGAACTAGAAGTCAACATGGAGGACATGAAAGATGAAGTTTACGTCCCAAAGAAAAAGACCTTCCACCCGTTTACAGGCCGAGGTTACAGACTGGGAAGTGTGGCCCCGCGTGTGGTGGCAAGGTCTCGGTCGATACACGAAGACTGTTCTGGTCCTCCTCTCCCGGCTGTGGAGCTGAATGAGGATCTTCCCATGACCTCCCTCCAGATTTGGCTGGCAGACGGTCAACGGCTTGTGCAGAGGTTTAATCTGAGCCATCGGATCAGTGATGTGCAGCATTTTGTGGAGCAGGCTCAGACAACGGACGCTCAGTTCATCCTGACTACATCCCTGCCATTCCGAGAGCTGAGAGATGAGAGTCAGAGTTTGGAAGAAGCTGACTTAGCGAATGCTGTCATCGTTCAGAGGCCTCTCAACACACAAGCTCCTTTCGGTCACTCCTGACTGTTTTTGTTTGCACCAGAGACTCTGATCTTTTGGTCCCACCCATGTTTGGGGAACATTTCATAAATCCATCTCTTTTAAAACCATAAAAGCCTGTGTTTTTGTCTGATTCTGAATATATGGGTCCTTTGGACATCATTATGACTGTATAAATGGACACTCAACACAAATAGCTTTAAAGGAATGGTTCACCCAAAAATGAAAAATCTGACTGGAAATGGTTGTTGAGTGGGTAATTAATAAA

Function

symbol description
ubxn2a Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human UBXN2A (UBX domain protein 2A).

GO:

id name namespace
GO:0061025 membrane fusion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04514094_04517849.mRNA True 1126 mRNA 0.46 6 4513850 4517849

Neighbor

gene id symbol gene type direction distance location
CI01000029_04485919_04510826 MFSD2B coding downstream 3024 4485919 ~ 4510826 (-)
CI01000029_04460778_04463540 FKBP1B coding downstream 50310 4460159 ~ 4463540 (-)
CI01000029_04433110_04458444 MUT coding downstream 55406 4433054 ~ 4458444 (-)
CI01000029_04272476_04278373 RUNX2A, RUNX2 coding downstream 234869 4271586 ~ 4278981 (-)
CI01000029_04246988_04247383 RUNX2B coding downstream 264799 4245107 ~ 4249051 (-)
CI01000029_04577893_04580321 NA coding upstream 59834 4577683 ~ 4580974 (-)
CI01000029_04611378_04794476 KLHL29 coding upstream 93529 4611378 ~ 4794476 (-)
CI01000029_04881932_04882348 NA coding upstream 363996 4881845 ~ 4883735 (-)
CI01000029_04898116_04905715 TRIB2 coding upstream 379775 4897624 ~ 4905811 (-)
CI01000029_04997226_05004488 NAPB, NAPBA coding upstream 479377 4997226 ~ 5004935 (-)
G154209 NA non-coding downstream 86882 4424924 ~ 4426968 (-)
G154239 NA non-coding downstream 104354 4409278 ~ 4409496 (-)
G154238 NA non-coding downstream 105051 4408581 ~ 4408799 (-)
G154234 NA non-coding downstream 110789 4402831 ~ 4403061 (-)
G154198 NA non-coding downstream 118100 4395419 ~ 4395750 (-)
G154229 NA non-coding upstream 6165 4524014 ~ 4529646 (-)
G154216 NA non-coding upstream 148506 4666355 ~ 4722192 (-)
G154230 NA non-coding upstream 158973 4676822 ~ 4682438 (-)
G154224 NA non-coding upstream 174107 4691956 ~ 4694050 (-)
G154221 NA non-coding upstream 235149 4752998 ~ 4757552 (-)
CI01000029_03698769_03707177 NA other downstream 806598 3698572 ~ 3707883 (-)
G153891 NA other downstream 1227296 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 1921048 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 3219727 1292249 ~ 1294123 (-)
G154415 NA other upstream 468259 4986108 ~ 4990990 (-)
G156542 NA other upstream 2652518 7170367 ~ 7170951 (-)
G156495 NA other upstream 2848478 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location